(33 nodes) Cytosolic small ribosomal subunit network (Pyricularia oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (287 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	MGG_06657	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (94 aa)
	MGG_06768	Uncharacterized protein. (580 aa)
	MGG_06837	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	MGG_16248	30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (265 aa)
	MGG_02392	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (63 aa)
	MGG_09894	40S ribosomal protein S28. (68 aa)
	MGG_08260	Uncharacterized protein. (308 aa)
	MGG_10370	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	MGG_07928	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	MGG_07929	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	MGG_05026	40S ribosomal protein S19. (152 aa)
	MGG_16843	Uncharacterized protein. (161 aa)
	MGG_05238	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	MGG_12892	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (144 aa)
	MGG_03680	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	MGG_03679	Uncharacterized protein. (325 aa)
	MGG_06480	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (147 aa)
	MGG_06479	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	MGG_10680	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (135 aa)
	MGG_03251	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
	MGG_03236	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
	MGG_00588	CIA30 family protein. (252 aa)
	MGG_00587	BZIP domain-containing protein. (333 aa)
	MGG_01113	40S ribosomal protein S10-A. (170 aa)
	MGG_00932	Uncharacterized protein. (432 aa)
	MGG_00221	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	MGG_00847	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (705 aa)
	MGG_04114	40S ribosomal protein S17. (148 aa)
	MGG_02952	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	MGCH7_ch7g630	40S ribosomal protein S27. (82 aa)
	RPS29	40S ribosomal protein S29. (56 aa)

Your Current Organism:

Pyricularia oryzae

NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGCH7_ch7g630	MGG_00221	G5EH53	G4NDL6	40S ribosomal protein S27.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
MGCH7_ch7g630	MGG_00587	G5EH53	G4NBA9	40S ribosomal protein S27.	BZIP domain-containing protein.	0.938
MGCH7_ch7g630	MGG_00588	G5EH53	G4NBA6	40S ribosomal protein S27.	CIA30 family protein.	0.938
MGCH7_ch7g630	MGG_00932	G5EH53	G4NDE7	40S ribosomal protein S27.	Uncharacterized protein.	0.990
MGCH7_ch7g630	MGG_01113	G5EH53	G4NC88	40S ribosomal protein S27.	40S ribosomal protein S10-A.	0.999
MGCH7_ch7g630	MGG_02392	G5EH53	G4MR23	40S ribosomal protein S27.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
MGCH7_ch7g630	MGG_02952	G5EH53	G4NLC8	40S ribosomal protein S27.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
MGCH7_ch7g630	MGG_03236	G5EH53	G4N9W9	40S ribosomal protein S27.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
MGCH7_ch7g630	MGG_03251	G5EH53	G4N9V2	40S ribosomal protein S27.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.999
MGCH7_ch7g630	MGG_03679	G5EH53	G4N6R8	40S ribosomal protein S27.	Uncharacterized protein.	0.988
MGCH7_ch7g630	MGG_03680	G5EH53	G4N6R7	40S ribosomal protein S27.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.991
MGCH7_ch7g630	MGG_04114	G5EH53	G4NIU4	40S ribosomal protein S27.	40S ribosomal protein S17.	0.999
MGCH7_ch7g630	MGG_05026	G5EH53	G4N3V2	40S ribosomal protein S27.	40S ribosomal protein S19.	0.999
MGCH7_ch7g630	MGG_05238	G5EH53	G4N5C8	40S ribosomal protein S27.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.999
MGCH7_ch7g630	MGG_06479	G5EH53	G4N701	40S ribosomal protein S27.	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family.	0.999
MGCH7_ch7g630	MGG_06480	G5EH53	G4N700	40S ribosomal protein S27.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.989
MGCH7_ch7g630	MGG_06657	G5EH53	G4MKR2	40S ribosomal protein S27.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
MGCH7_ch7g630	MGG_06768	G5EH53	G4MLN8	40S ribosomal protein S27.	Uncharacterized protein.	0.985
MGCH7_ch7g630	MGG_06837	G5EH53	G4MMG3	40S ribosomal protein S27.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.880
MGCH7_ch7g630	MGG_07928	G5EH53	G4N2G1	40S ribosomal protein S27.	Ubiquitin-40S ribosomal protein S27a.	0.968