(67 nodes) RNA recognition motif network (Pyricularia oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGG_00470	RRM domain-containing protein. (702 aa)
	MGG_12864	RRM domain-containing protein. (257 aa)
	MGG_06296	Nuclear cap-binding protein subunit 2. (185 aa)
	MGG_06318	Uncharacterized protein. (1200 aa)
	MGG_03506	Uncharacterized protein. (295 aa)
	MGG_12843	RRM domain-containing protein. (323 aa)
	MGG_06400	Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1. (479 aa)
	MGG_13526	RNP domain-containing protein. (428 aa)
	MGG_03722	Uncharacterized protein. (648 aa)
	MGG_03740	RNA-binding protein 8A. (160 aa)
	MGG_05264	Translation initiation factor 4B. (563 aa)
	MGG_07511	RRM domain-containing protein. (324 aa)
	MGG_05815	Pre-rRNA-processing protein ESF2. (330 aa)
	MGG_06218	RNA-binding post-transcriptional regulator cip2. (639 aa)
	MGG_04351	U2 small nuclear ribonucleoprotein B. (207 aa)
	MGG_11063	Nucleolar protein 12. (551 aa)
	MGG_11418	Nucleic acid-binding protein. (279 aa)
	MGG_11229	Uncharacterized protein. (729 aa)
	MGG_01274	RNA-binding protein. (412 aa)
	MGG_01268	Nuclear localization sequence binding protein. (486 aa)
	MGG_01217	Multiple RNA-binding domain-containing protein 1. (867 aa)
	MGG_15607	RRM domain-containing protein. (405 aa)
	MGG_08899	RRM domain-containing protein. (272 aa)
	MGG_08898	Differentiation regulator. (806 aa)
	MGG_01746	Uncharacterized protein. (379 aa)
	MGG_08840	Nucleolar protein 4. (722 aa)
	MGG_07327	Asparagine-rich protein. (629 aa)
	MGG_07252	Polyadenylate-binding protein 2. (193 aa)
	MGG_04816	RRM domain-containing protein. (236 aa)
	MGG_07203	Uncharacterized protein. (623 aa)
	MGG_01579	Pre-mRNA branch site protein p14. (115 aa)
	MGG_12370	MKI67 FHA domain-interacting nucleolar phosphoprotein. (378 aa)
	MGG_04667	Uncharacterized protein. (529 aa)
	MGG_07147	Uncharacterized protein. (766 aa)
	MGG_07118	Sporulation-specific protein 5. (530 aa)
	MGG_01519	Uncharacterized protein. (427 aa)
	MGG_07085	Small nuclear ribonucleoprotein U1a. (234 aa)
	MGG_04442	Splicing factor U2AF-associated protein 2. (410 aa)
	MGG_04482	RRM domain-containing protein. (206 aa)
	MGG_04621	YTH domain-containing protein. (630 aa)
	MGG_09948	Splicing factor U2AF 23 kDa subunit. (209 aa)
	MGG_09885	Cleavage stimulation factor 64-kDa subunit. (305 aa)
	MGG_04727	U4/U6 snRNA-associated-splicing factor PRP24. (1133 aa)
	MGG_06881	Uncharacterized protein. (568 aa)
	MGG_06668	RRM domain-containing protein. (258 aa)
	MGG_04399	RRM domain-containing protein. (332 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (303 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (746 aa)
	PAB1	Polyadenylate-binding protein, cytoplasmic and nuclear; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the nucleus, involved in both mRNA cleavage and polyadenylation. Is also required for efficient mRNA export to the cytoplasm. Acts in concert with a poly(A)-specific nuclease (PAN) to affect poly(A) tail shortening, which may occur concomitantly with either nucleocytoplasmic mRNA transport or translational initiation. In the cytoplasm, stimulates translation initiation and [...] (762 aa)
	CWC2	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...] (394 aa)
	MGCH7_ch7g750	Uncharacterized protein. (655 aa)
	MGCH7_ch7g848	RNA binding protein. (622 aa)
	MGG_03017	Uncharacterized protein. (795 aa)
	MGG_03086	U2 snRNP component IST3. (330 aa)
	MGG_02580	RRM domain-containing protein. (331 aa)
	MGG_02730	RNA binding protein. (365 aa)
	MGG_03912	RRM domain-containing protein. (676 aa)
	MGG_12101	RNA splicing factor Pad-1. (564 aa)
	MGG_03973	Splicing factor 3B subunit 4. (407 aa)
	MGG_08741	tRNA selenocysteine-associated protein 1. (415 aa)
	MGG_11466	RRM domain-containing protein. (878 aa)
	MGG_00985	Uncharacterized protein. (454 aa)
	MGG_11457	Uncharacterized protein. (331 aa)
	MGG_00348	Splicing factor U2AF 50 kDa subunit. (620 aa)
	MGG_01109	Nuclear cap-binding protein. (155 aa)
	MGG_00444	RRM domain-containing protein. (281 aa)
	MGG_10681	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (505 aa)

Your Current Organism:

Pyricularia oryzae

NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CWC2	MGG_03086	Q51TF7	G4NKC1	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...]	U2 snRNP component IST3.	0.972
CWC2	MGG_03973	Q51TF7	G4NH06	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...]	Splicing factor 3B subunit 4.	0.728
CWC2	MGG_04351	Q51TF7	G4MYZ3	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...]	U2 small nuclear ribonucleoprotein B.	0.990
CWC2	MGG_06296	Q51TF7	G4N872	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...]	Nuclear cap-binding protein subunit 2.	0.438
CWC2	MGG_07085	Q51TF7	G4MSP6	Pre-mRNA-splicing factor CWC2; Involved in the first step of pre-mRNA splicing. Required for cell growth and cell cycle control. Plays a role in the levels of the U1, U4, U5 and U6 snRNAs and the maintenance of the U4/U6 snRNA complex. May provide the link between the 'nineteen complex' NTC spliceosome protein complex and the spliceosome through the U6 snRNA. Associates predominantly with U6 snRNAs in assembled active spliceosomes. Binds directly to the internal stem-loop (ISL) domain of the U6 snRNA and to the pre-mRNA intron near the 5' splice site during the activation and catalytic [...]	Small nuclear ribonucleoprotein U1a.	0.820
MGCH7_ch7g848	MGG_06296	G5EH29	G4N872	RNA binding protein.	Nuclear cap-binding protein subunit 2.	0.408
MGG_00348	MGG_01579	G4NCQ7	G4MTV6	Splicing factor U2AF 50 kDa subunit.	Pre-mRNA branch site protein p14.	0.975
MGG_00348	MGG_02580	G4NCQ7	G4NJU7	Splicing factor U2AF 50 kDa subunit.	RRM domain-containing protein.	0.681
MGG_00348	MGG_03017	G4NCQ7	G4NKV1	Splicing factor U2AF 50 kDa subunit.	Uncharacterized protein.	0.843
MGG_00348	MGG_03086	G4NCQ7	G4NKC1	Splicing factor U2AF 50 kDa subunit.	U2 snRNP component IST3.	0.452
MGG_00348	MGG_03740	G4NCQ7	G4N6F0	Splicing factor U2AF 50 kDa subunit.	RNA-binding protein 8A.	0.615
MGG_00348	MGG_03912	G4NCQ7	G4NH83	Splicing factor U2AF 50 kDa subunit.	RRM domain-containing protein.	0.603
MGG_00348	MGG_03973	G4NCQ7	G4NH06	Splicing factor U2AF 50 kDa subunit.	Splicing factor 3B subunit 4.	0.993
MGG_00348	MGG_04351	G4NCQ7	G4MYZ3	Splicing factor U2AF 50 kDa subunit.	U2 small nuclear ribonucleoprotein B.	0.640
MGG_00348	MGG_04399	G4NCQ7	G4MKM1	Splicing factor U2AF 50 kDa subunit.	RRM domain-containing protein.	0.772
MGG_00348	MGG_04442	G4NCQ7	G4MSB8	Splicing factor U2AF 50 kDa subunit.	Splicing factor U2AF-associated protein 2.	0.676
MGG_00348	MGG_04482	G4NCQ7	G4MSA5	Splicing factor U2AF 50 kDa subunit.	RRM domain-containing protein.	0.657
MGG_00348	MGG_04816	G4NCQ7	G4MU58	Splicing factor U2AF 50 kDa subunit.	RRM domain-containing protein.	0.480
MGG_00348	MGG_06218	G4NCQ7	G4N0G5	Splicing factor U2AF 50 kDa subunit.	RNA-binding post-transcriptional regulator cip2.	0.526
MGG_00348	MGG_06296	G4NCQ7	G4N872	Splicing factor U2AF 50 kDa subunit.	Nuclear cap-binding protein subunit 2.	0.927