STRINGSTRING
CLP1 CLP1 FAL1 FAL1 PAB1 PAB1 ABD1 ABD1 SUB2 SUB2 DBP5 DBP5 MGG_02504 MGG_02504 MGG_04399 MGG_04399 MGG_06668 MGG_06668 MGG_06859 MGG_06859 MGG_06881 MGG_06881 MGG_06948 MGG_06948 MGG_05637 MGG_05637 MGG_05671 MGG_05671 MGG_05680 MGG_05680 MGG_05760 MGG_05760 MGG_09885 MGG_09885 MGG_04513 MGG_04513 MGG_07252 MGG_07252 MGG_10195 MGG_10195 MGG_01676 MGG_01676 MGG_01804 MGG_01804 MGG_08083 MGG_08083 MGG_10820 MGG_10820 MGG_04430 MGG_04430 MGG_05325 MGG_05325 MGG_09536 MGG_09536 MGG_06063 MGG_06063 MGG_06099 MGG_06099 MGG_08573 MGG_08573 MGG_06570 MGG_06570 MGG_03740 MGG_03740 MGG_03722 MGG_03722 MGG_03704 MGG_03704 MGG_06406 MGG_06406 MGG_06313 MGG_06313 MGG_06296 MGG_06296 MGG_06266 MGG_06266 MGG_03265 MGG_03265 MGG_00680 MGG_00680 MGG_14349 MGG_14349 MGG_00449 MGG_00449 MGG_00976 MGG_00976 MGG_00149 MGG_00149 MGG_00739 MGG_00739 MGG_12130 MGG_12130 MGG_12123 MGG_12123 MGG_03912 MGG_03912 MGG_14293 MGG_14293 MGG_02580 MGG_02580 MGG_03004 MGG_03004
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (455 aa)
FAL1ATP-dependent RNA helicase FAL1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA (By similarity). Belongs to the DEAD box helicase family. DDX48/FAL1 subfamily. (401 aa)
PAB1Polyadenylate-binding protein, cytoplasmic and nuclear; Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the nucleus, involved in both mRNA cleavage and polyadenylation. Is also required for efficient mRNA export to the cytoplasm. Acts in concert with a poly(A)-specific nuclease (PAN) to affect poly(A) tail shortening, which may occur concomitantly with either nucleocytoplasmic mRNA transport or translational initiation. In the cytoplasm, stimulates translation initiation and [...] (762 aa)
ABD1mRNA cap guanine-N7 methyltransferase; Responsible for methylating the 5'-cap structure of mRNAs. Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family. (486 aa)
SUB2ATP-dependent RNA helicase SUB2; ATP-binding RNA helicase involved in transcription elongation and required for the export of mRNA out of the nucleus. SUB2 plays also a role in pre-mRNA splicing and spliceosome assembly. May be involved in rDNA and telomeric silencing, and maintenance of genome integrity (By similarity); Belongs to the DEAD box helicase family. DECD subfamily. (436 aa)
DBP5ATP-dependent RNA helicase DBP5; ATP-dependent RNA helicase associated with the nuclear pore complex and essential for mRNA export from the nucleus. May participate in a terminal step of mRNA export through the removal of proteins that accompany mRNA through the nucleopore complex. May also be involved in early transcription (By similarity). (477 aa)
MGG_02504Elongation factor Tu GTP binding domain-containing protein. (563 aa)
MGG_04399RRM domain-containing protein. (332 aa)
MGG_06668RRM domain-containing protein. (258 aa)
MGG_06859Mago nashi like 2. (157 aa)
MGG_06881Uncharacterized protein. (568 aa)
MGG_06948NTF2 domain-containing protein. (178 aa)
MGG_05637Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (481 aa)
MGG_05671Protein phosphatase PP2A regulatory subunit A. (623 aa)
MGG_05680Uncharacterized protein. (263 aa)
MGG_05760Mago-bind domain-containing protein. (205 aa)
MGG_09885Cleavage stimulation factor 64-kDa subunit. (305 aa)
MGG_04513PWI domain-containing protein. (402 aa)
MGG_07252Polyadenylate-binding protein 2. (193 aa)
MGG_10195Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (309 aa)
MGG_01676Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (266 aa)
MGG_01804Endoribonuclease YSH1. (829 aa)
MGG_08083Uncharacterized protein. (545 aa)
MGG_10820DUF3453 domain-containing protein. (730 aa)
MGG_04430mRNA export factor mex67. (659 aa)
MGG_05325Polyadenylation factor subunit 2. (655 aa)
MGG_09536Uncharacterized protein. (659 aa)
MGG_06063Nonsense-mediated mRNA decay factor. (1125 aa)
MGG_06099Serine/threonine-protein phosphatase. (328 aa)
MGG_08573CID domain-containing protein. (695 aa)
MGG_06570Cleavage and polyadenylation specificity factor subunit 2. (962 aa)
MGG_03740RNA-binding protein 8A. (160 aa)
MGG_03722Uncharacterized protein. (648 aa)
MGG_03704RNA polymerase II subunit A domain phosphatase SSU72. (259 aa)
MGG_06406WD_REPEATS_REGION domain-containing protein. (373 aa)
MGG_06313Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (616 aa)
MGG_06296Nuclear cap-binding protein subunit 2. (185 aa)
MGG_06266Eukaryotic peptide chain release factor subunit 1. (435 aa)
MGG_03265mRNA 3'-end-processing protein RNA-14. (1057 aa)
MGG_00680mRNA 3'-end-processing protein yth-1. (276 aa)
MGG_14349Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (413 aa)
MGG_00449Eukaryotic peptide chain release factor GTP-binding subunit. (731 aa)
MGG_00976Regulator-nonsense transcripts 1. (1105 aa)
MGG_00149Serine/threonine-protein phosphatase. (522 aa)
MGG_00739Cft-1. (1452 aa)
MGG_12130Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (670 aa)
MGG_12123Cap binding protein. (821 aa)
MGG_03912RRM domain-containing protein. (676 aa)
MGG_14293Fip1 domain-containing protein. (332 aa)
MGG_02580RRM domain-containing protein. (331 aa)
MGG_03004Uncharacterized protein. (877 aa)
Your Current Organism:
Pyricularia oryzae
NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15
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