(40 nodes) Nucleotide excision repair network (Pyricularia oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGG_13023	Replication factor C subunit 3. (404 aa)
	MGG_06690	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (516 aa)
	MGG_06731	Uncharacterized protein. (192 aa)
	MGG_15176	Cyclin-H. (397 aa)
	MGG_02459	DNA polymerase delta small subunit. (497 aa)
	MGG_12329	DNA excision repair protein ERCC-8. (521 aa)
	MGG_07124	Replication protein A 32 kDa subunit. (275 aa)
	MGG_07222	DNA polymerase epsilon subunit B. (865 aa)
	MGG_01656	UV excision repair protein Rad23. (401 aa)
	MGG_01699	Uncharacterized protein. (1045 aa)
	MGG_15089	Uncharacterized protein. (93 aa)
	MGG_08844	RING-box protein 1. (119 aa)
	MGG_14763	Cullin-4B; Belongs to the cullin family. (872 aa)
	MGG_08071	DNA polymerase. (1103 aa)
	MGG_04389	Replication factor C subunit 2. (384 aa)
	MGG_06208	DNA repair protein RAD14. (420 aa)
	MGG_13401	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (410 aa)
	MGG_07526	Replication factor C subunit 4. (358 aa)
	MGG_16867	Uncharacterized protein. (1183 aa)
	MGG_05239	DNA repair and recombination protein RAD26. (1197 aa)
	MGG_06470	DNA repair helicase RAD25. (835 aa)
	MGG_03605	CDK-activating kinase assembly factor MAT1. (360 aa)
	MGG_06370	DNA ligase. (896 aa)
	MGG_03204	Replication factor C subunit 1. (1084 aa)
	MGG_03202	Replication factor C subunit 5. (352 aa)
	MGG_03192	RNA polymerase II transcription factor B subunit 1. (653 aa)
	MGG_03132	DNA repair helicase rad15. (795 aa)
	MGG_00685	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (610 aa)
	MGG_00630	ATP-dependent DNA helicase srs2. (998 aa)
	MGG_00518	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (259 aa)
	MGG_00397	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (490 aa)
	MGG_14640	Mating-type switching protein swi10. (408 aa)
	MGG_00155	DNA-repair protein rad13. (1269 aa)
	MGG_17634	Uncharacterized protein. (878 aa)
	MGG_04010	Uncharacterized protein. (113 aa)
	MGG_03877	RNA polymerase II transcription factor B subunit 4. (380 aa)
	MGG_03854	DNA ligase. (859 aa)
	MGG_03850	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2240 aa)
	MGG_04127	Uncharacterized protein. (452 aa)
	MGCH7_ch7g557	DNA repair protein rad16. (960 aa)

Your Current Organism:

Pyricularia oryzae

NCBI taxonomy Id: 242507
Other names: Magnaporthe grisea 70-15, P. oryzae 70-15, Pyricularia oryzae 70-15

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGCH7_ch7g557	MGG_00155	G5EHM7	G4NE59	DNA repair protein rad16.	DNA-repair protein rad13.	0.902
MGCH7_ch7g557	MGG_00397	G5EHM7	G4NCE6	DNA repair protein rad16.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.636
MGCH7_ch7g557	MGG_00518	G5EHM7	G4NBP7	DNA repair protein rad16.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.670
MGCH7_ch7g557	MGG_00630	G5EHM7	G4NB43	DNA repair protein rad16.	ATP-dependent DNA helicase srs2.	0.636
MGCH7_ch7g557	MGG_00685	G5EHM7	G4NAX8	DNA repair protein rad16.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.975
MGCH7_ch7g557	MGG_01656	G5EHM7	G4MUE8	DNA repair protein rad16.	UV excision repair protein Rad23.	0.648
MGCH7_ch7g557	MGG_01699	G5EHM7	G4MUV6	DNA repair protein rad16.	Uncharacterized protein.	0.478
MGCH7_ch7g557	MGG_03132	G5EHM7	G4NAV5	DNA repair protein rad16.	DNA repair helicase rad15.	0.864
MGCH7_ch7g557	MGG_03192	G5EHM7	G4NAD4	DNA repair protein rad16.	RNA polymerase II transcription factor B subunit 1.	0.724
MGCH7_ch7g557	MGG_03202	G5EHM7	G4NAB7	DNA repair protein rad16.	Replication factor C subunit 5.	0.694
MGCH7_ch7g557	MGG_03204	G5EHM7	G4NAB5	DNA repair protein rad16.	Replication factor C subunit 1.	0.846
MGCH7_ch7g557	MGG_03850	G5EHM7	G4NHG4	DNA repair protein rad16.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.695
MGCH7_ch7g557	MGG_03877	G5EHM7	G4NHC5	DNA repair protein rad16.	RNA polymerase II transcription factor B subunit 4.	0.688
MGCH7_ch7g557	MGG_04389	G5EHM7	G4MZE2	DNA repair protein rad16.	Replication factor C subunit 2.	0.694
MGCH7_ch7g557	MGG_05239	G5EHM7	G4N5C9	DNA repair protein rad16.	DNA repair and recombination protein RAD26.	0.693
MGCH7_ch7g557	MGG_06208	G5EHM7	G4N0F6	DNA repair protein rad16.	DNA repair protein RAD14.	0.980
MGCH7_ch7g557	MGG_06470	G5EHM7	G4N765	DNA repair protein rad16.	DNA repair helicase RAD25.	0.895
MGCH7_ch7g557	MGG_06690	G5EHM7	G4ML50	DNA repair protein rad16.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.715
MGCH7_ch7g557	MGG_07124	G5EHM7	G4MT45	DNA repair protein rad16.	Replication protein A 32 kDa subunit.	0.900
MGCH7_ch7g557	MGG_07222	G5EHM7	G4MU32	DNA repair protein rad16.	DNA polymerase epsilon subunit B.	0.644