Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PG_0668 | hmuR | PG_0668 | PG_1552 | TonB-dependent receptor. | TonB-dependent receptor HmuR. | 0.449 |
| cobB | rprY | PG_0004 | PG_1089 | Transcriptional regulator, Sir2 family; Identified by match to PFAM protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily. | DNA-binding response regulator RprY; Similar to GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, PID:484051, GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, and PID:484051; identified by sequence similarity; putative. | 0.552 |
| fimA | hagA | PG_2132 | PG_1837 | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | Hemagglutinin protein HagA; Agglutinates erythrocytes. | 0.550 |
| fimA | prtRII | PG_2132 | PG_0506 | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.560 |
| fimA | serB | PG_2132 | PG_0653 | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | Phosphoserine phosphatase. | 0.548 |
| hagA | fimA | PG_1837 | PG_2132 | Hemagglutinin protein HagA; Agglutinates erythrocytes. | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | 0.550 |
| hmuR | PG_0668 | PG_1552 | PG_0668 | TonB-dependent receptor HmuR. | TonB-dependent receptor. | 0.449 |
| hmuR | prtRII | PG_1552 | PG_0506 | TonB-dependent receptor HmuR. | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | 0.540 |
| prtRII | fimA | PG_0506 | PG_2132 | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | 0.560 |
| prtRII | hmuR | PG_0506 | PG_1552 | Arginine-specific cysteine proteinase; Thiol protease. Acts synergistically with RgpA to catalyze the maturation of fimbrial subunits, such as FimA (By similarity). Its proteolytic activity is a major factor in both periodontal tissue destruction and in evasion of host defense mechanisms (Probable). | TonB-dependent receptor HmuR. | 0.540 |
| rprY | cobB | PG_1089 | PG_0004 | DNA-binding response regulator RprY; Similar to GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, PID:484051, GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, and PID:484051; identified by sequence similarity; putative. | Transcriptional regulator, Sir2 family; Identified by match to PFAM protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily. | 0.552 |
| serB | fimA | PG_0653 | PG_2132 | Phosphoserine phosphatase. | Fimbrilin; Structural subunit of the major fimbriae. These long, filamentous pili are attached to the cell surface; they mediate biofilm formation, adhesion onto host cells and onto other bacteria that are part of the oral microbiome. They play an important role in the invasion of periodontal tissues. Fimbriae and their constituents are major virulence factors. FimA proteins from different strains have highly divergent sequences, and this has been used for classification. The sequence-based classification correlates with pathogenicity; Belongs to the bacteroidetes fimbrillin superfamil [...] | 0.548 |