STRINGSTRING
RB1639 RB1639 RB1641 RB1641 RB1644 RB1644 RB1646 RB1646 RB1648 RB1648 RB1649 RB1649 speE speE RB3208 RB3208 RB3210 RB3210 RB3212 RB3212 RB3213 RB3213 speD speD RB3221 RB3221 RB3224 RB3224 RB8877 RB8877 yniI yniI ydjG ydjG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB1639Similar to monooxygenase; PMID: 11823852 best DB hits: BLAST: gb:AAF54264.1; (AE003680) CG8032 gene product [Drosophila; E=0.033 embl:CAB59668.1; (AL132674) monooxygenase. [Streptomyces; E=0.19 pir:A83453; probable flavin-containing monooxygenase PA1538; E=0.44 PFAM: PF01494; FAD binding domain; E=0.0018 PF00070; Pyridine nucleotide-disulphide; E=0.013 PF01593; Flavin containing amine oxidase; E=0.25. (599 aa)
RB1641Conserved hypothetical protein-putative sodium/calcium antiporter; PMID: 8905231 best DB hits: BLAST: pir:S74922; hypothetical protein slr0681 - Synechocystis sp. (strain; E=8e-56 pir:H82064; conserved hypothetical protein VC2522 [imported] -; E=2e-33 gb:AAK02512.1; (AE006079) unknown [Pasteurella multocida]; E=8e-33 COG: slr0681; COG0530 Ca2+/Na+ antiporter; E=7e-57 PFAM: PF01699; Sodium/calcium exchanger protein; E=6.8e-32. (339 aa)
RB1644Hypothetical protein-signal peptide and transmembrane prediction. (123 aa)
RB1646Hypothetical protein. (69 aa)
RB1648Hypothetical protein-transmembrane prediction. (101 aa)
RB1649Hypothetical protein. (54 aa)
speEPutative spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (514 aa)
RB3208Hypothetical protein-transmembrane prediction. (95 aa)
RB3210Hypothetical protein. (96 aa)
RB3212Hypothetical protein-signal peptide prediction. (54 aa)
RB3213Hypothetical protein-transmembrane prediction; PMID: 11823852. (527 aa)
speDProbable S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine. (164 aa)
RB3221Best DB hits: BLAST: pir:E69789; hypothetical protein ydjI - Bacillus subtilis -----; E=3e-25 gb:AAK05447.1; AE006367_3 (AE006367) UNKNOWN PROTEIN [Lactococcus; E=6e-06 ddbj:BAB05524.1; (AP001513) BH1805~unknown conserved protein in; E=7e-05. (406 aa)
RB3224Hypothetical protein. (148 aa)
RB8877Hypothetical protein. (89 aa)
yniIConserved hypothetical protein; Best DB hits: BLAST: gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=3e-10 pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=3e-09 ddbj:BAB05525.1; (AP001513) BH1806~unknown conserved protein; E=5e-09. (312 aa)
ydjGBest DB hits: BLAST: pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=2e-07 embl:CAA76859.1; (Y17797) hypothetical protein [Enterococcus; E=2e-07 gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=8e-04. (342 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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