STRINGSTRING
RB10358 RB10358 RB10359 RB10359 RB10362 RB10362 RB10364 RB10364 RB1140 RB1140 RB1142 RB1142 RB1143 RB1143 RB1145 RB1145 RB1147 RB1147 tadB tadB RB1149 RB1149 RB1153 RB1153 RB1154 RB1154 RB1155 RB1155 RB1156 RB1156 RB13057 RB13057 RB13059 RB13059 RB13062 RB13062 RB13063 RB13063 RB13066 RB13066 RB13068 RB13068 RB13071 RB13071 RB13073 RB13073 tadB-2 tadB-2 RB13077 RB13077 RB13078 RB13078 RB13080 RB13080 RB13082 RB13082 RB13084 RB13084 RB13086 RB13086 RB13102 RB13102 RB13104 RB13104 RB13106 RB13106 pilF pilF cpaA cpaA cpaB cpaB cpaC cpaC cpaE cpaE tadA tadA tadB-3 tadB-3 tadC tadC RB9460 RB9460 RB9462 RB9462 RB9463 RB9463
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB10358Hypothetical protein. (258 aa)
RB10359Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (280 aa)
RB10362Hypothetical protein. (80 aa)
RB10364Conserved hypothetical protein-putative ATPase with chaperone activity; Best DB hits: BLAST: pir:H69181; hypothetical protein MTH616 - Methanobacterium; E=5e-30 pir:H69125; hypothetical protein MTH210 - Methanobacterium; E=2e-29 gb:AAC48226.1; (AF006826) N-ethylmaleimide-sensitive fusion; E=0.21 COG: MTH616; COG0606 Predicted ATPases; E=5e-31 PFAM: PF00004; ATPase family associated with variou; E=1.9e-06 PF01202; Shikimate kinase; E=0.31. (396 aa)
RB1140Response regulator; PMID: 7699720 best DB hits: BLAST: embl:CAA03999.1; (AJ000330) Styrene response regulator; E=3e-15 gb:AAC23717.1; (AF031161) transcriptional activator [Pseudomonas; E=3e-15 gb:AAG09418.1; AF180147_10 (AF180147) response regulator TobT; E=5e-15 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-15 ygeK; COG2771 DNA-binding HTH domains; E=6e-07 DR0987; COG2197 Response regulators consisting of a CheY-like; E=1e-06 PFAM: PF00072; Response regulator receiver doma; E=2.4e-10 PF00196; Bacterial regulatory proteins, l; E=6.2e-20. (211 aa)
RB1142Hypothetical protein-signal peptide and transmembrane prediction. (142 aa)
RB1143Hypothetical protein. (144 aa)
RB1145Conserved hypothetical protein; PMID: 11823852 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=0.26 gb:AAB90541.1; (AE001056) cell division inhibitor (minD-1); E=0.73 PFAM: PF00398; Ribosomal RNA adenine dimethylases; E=0.84. (414 aa)
RB1147Secretory protein kinase; Best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=1e-105 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=2e-88 gb:AAG33866.1; AF317389_1 (AF317389) putative type IV NTPase; E=1e-86 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-79 PFAM: PF00004; ATPase family associated with; E=0.16 PF01443; Viral (Superfamily 1) RNA hel; E=0.17 PF02223; Thymidylate kinase; E=0.69. (458 aa)
tadBConserved hypothetical protein; PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=9e-20 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=6e-11 embl:CAB92603.1; (AL356813) putative integral membrane protein; E=7e-06 COG: PA4301; COG2064 Predicted membrane protein; E=5e-12. (314 aa)
RB1149Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=1e-08 embl:CAB92604.1; (AL356813) putative integral membrane protein; E=3e-06 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-04 COG: PAB1458; COG2064 Predicted membrane protein; E=6e-05. (313 aa)
RB1153Hypothetical protein-signal peptide prediction; PMID: 11474104. (154 aa)
RB1154Hypothetical protein-transmembrane prediction. (157 aa)
RB1155Hypothetical protein. (71 aa)
RB1156Hypothetical protein-transmembrane prediction. (599 aa)
RB13057Hypothetical protein. (85 aa)
RB13059Hypothetical protein-signal peptide and transmembrane prediction. (114 aa)
RB13062Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11259647. (141 aa)
RB13063Hypothetical protein-transmembrane prediction. (362 aa)
RB13066Hypothetical protein-transmembrane prediction. (590 aa)
RB13068Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02271; Ubiquinol-cytochrome C reductase com; E=0.21. (499 aa)
RB13071Probable chromosome partitioning ATPase; PMID: 9054507 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=2e-12 embl:CAA06604.1; (AJ005576) MinD protein [Streptomyces griseus]; E=2e-10 embl:CAB92599.1; (AL356813) putative septum site-determining; E=4e-10 COG: DR0013; COG1192 ATPases involved in chromosome partitioning; E=2e-09 BH2436; COG0455 ATPases involved in chromosome partitioning; E=2e-07 HP0331; COG2894 Septum formation inhibitor-activating ATPase; E=4e-07 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.27. (402 aa)
RB13073Putative secretory protein; PMID: 7934814 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=2e-98 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=2e-92 gb:AAG33866.1; AF317389_1 (AF317389) putative type IV NTPase; E=4e-86 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-78 PFAM: PF01580; FtsK/SpoIIIE family; E=0.13 PF01443; Viral (Superfamily 1) RNA hel; E=0.067 PF00437; Bacterial type II secretion s; E=2.4e-24. (469 aa)
tadB-2Probable protein secretion system or pilus assembly related protein TadB; PMID: 11029439 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=0.005 gb:AAD38173.2; AF152598_2 (AF152598) TadB [Actinobacillus; E=0.41. (297 aa)
RB13077Probable integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) putative integral membrane protein; E=0.002. (306 aa)
RB13078Conserved hypothetical protein; PMID: 11298281 best DB hits: BLAST: gb:AAF81067.1; AF223364_2 (AF223364) unknown [Myxococcus xanthus]; E=8e-12 embl:CAB92612.1; (AL356813) putative secreted protein; E=6e-05 swissprot:Q9UZM5; Y743_PYRAB HYPOTHETICAL PROTEIN PAB0743 -----; E=0.006 COG: PAB0743; COG1430 Uncharacterized ACR; E=6e-04 PFAM: PF02643; Uncharacterized ACR, COG1430; E=4.1e-08. (151 aa)
RB13080Conserved hypothetical protein; PMID: 8688087 best DB hits: BLAST: swissprot:Q58492; YA92_METJA HYPOTHETICAL PROTEIN MJ1092 -----; E=5e-07 swissprot:P76425; YOHM_ECOLI HYPOTHETICAL 30.4 KDA PROTEIN IN; E=0.003 gb:AAG57167.1; AE005437_2 (AE005437) orf, hypothetical protein; E=0.019 COG: MJ1092; COG2215 Predicted membrane protein; E=5e-08. (235 aa)
RB13082Hypothetical protein. (73 aa)
RB13084Conserved hypothetical protein; PMID: 9537320 best DB hits: BLAST: pir:B70403; hypothetical protein aq_1194 - Aquifex aeolicus -----; E=3e-05 pir:G75360; conserved hypothetical protein - Deinococcus radiodurans; E=1e-04 pir:S74786; hypothetical protein slr1083 - Synechocystis sp. (strain; E=0.003. (179 aa)
RB13086Hypothetical protein. (83 aa)
RB13102Hypothetical protein-signal peptide prediction. (86 aa)
RB13104Probable type II secretion system protein; PMID: 8326859 best DB hits: BLAST: gb:AAG60826.1; AF322012_131 (AF322013) RhcC2 [Bradyrhizobium; E=2e-29 swissprot:P55702; Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ; E=5e-29 pir:G83108; probable type II secretion system protein PA4304; E=2e-21 COG: PA4304; COG1450 General secretory pathway protein D; E=2e-22 PFAM: PF00263; Bacterial type II and III secretion; E=5.2e-06. (704 aa)
RB13106Hypothetical protein-signal peptide prediction. (192 aa)
pilFProbable type IV fimbrial biogenesis protein PilF; PMID: 97128806 best DB hits: BLAST: gb:AAA62535.1; (U21320) contains TPR domain-like repeats; E=2e-04 gb:AAB63465.1; (U77412) O-linked GlcNAc transferase; E=2e-04 pir:H83171; type 4 fimbrial biogenesis protein PilF PA3805; E=4e-04 COG: PA3805; COG0457 TPR-repeat-containing proteins; E=4e-05. (242 aa)
cpaASimilar to type IV prepilin peptidase CpaA; PMID: 11823852 best DB hits: BLAST: swissprot:Q56740; LEP4_VIBVU TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=0.020 pir:S32915; type IV prepilin peptidase (EC 3.4.99.-) pilD -; E=0.059 pir:B82078; leader peptidase PilD VC2426 [imported] - Vibrio; E=0.065 COG: VC2426; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=0.006 PFAM: PF01478; Type III leader peptidase famil; E=0.028. (185 aa)
cpaBProbable pilus assembly protein CpaB; PMID: 10880436 best DB hits: BLAST: gb:AAF40191.1; AF229646_3 (AF229646) CpaB [Caulobacter crescentus]; E=0.003 pir:A70601; hypothetical protein Rv0990c - Mycobacterium; E=0.18. (403 aa)
cpaCPutative outer membrane channel for pilus assembly CpaC; PMID: 10880436 best DB hits: BLAST: swissprot:P55702; Y4XJ_RHISN HYPOTHETICAL 44.3 KD PROTEIN Y4XJ; E=1e-40 gb:AAG60826.1; AF322012_131 (AF322013) RhcC2 [Bradyrhizobium; E=4e-36 gb:AAF40192.1; AF229646_4 (AF229646) CpaC [Caulobacter crescentus]; E=5e-32 COG: PA4304; COG1450 General secretory pathway protein D; E=1e-24 PFAM: PF00263; Bacterial type II and III secreti; E=3e-26. (589 aa)
cpaEProbable pilus assembly protein CpaE; PMID: 10880436 best DB hits: BLAST: pir:F83108; hypothetical protein PA4303 [imported] - Pseudomonas; E=3e-11 gb:AAF40194.1; AF229646_6 (AF229646) CpaE [Caulobacter crescentus]; E=3e-06 swissprot:Q55900; MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND; E=3e-05 COG: sll0289; COG2894 Septum formation inhibitor-activating ATPase; E=2e-06 PH0612; COG0455 ATPases involved in chromosome partitioning; E=4e-05 BH3842_1; COG0784 CheY-like receiver domains; E=0.001 PFAM: PF00072; Response regulator receiver doma; E=0.0058. (409 aa)
tadASecretion system protein TadA; PMID: 8438237 PMID: 11566992 best DB hits: BLAST: gb:AAB36933.1; (U77780) secretory protein kinase [Chlorobium; E=1e-118 gb:AAF40195.1; AF229646_7 (AF229646) CpaF [Caulobacter crescentus]; E=1e-108 gb:AAD38172.2; AF152598_1 (AF152598) TadA [Actinobacillus; E=1e-101 COG: PA4302; COG0630 Predicted ATPases involved in pili and flagella; E=2e-92 PFAM: PF00004; ATPase family associated with; E=0.6 PF01580; FtsK/SpoIIIE family; E=0.017 PF01443; Viral (Superfamily 1) RNA hel; E=0.48. (459 aa)
tadB-3Secretion system protein TadB; PMID: 10880436 best DB hits: BLAST: gb:AAF40196.1; AF229646_8 (AF229646) TadB [Caulobacter crescentus]; E=2e-19 pir:D83108; hypothetical protein PA4301 [imported] - Pseudomonas; E=5e-12 embl:CAB92603.1; (AL356813) putative integral membrane protein; E=2e-09 COG: PA4301; COG2064 Predicted membrane protein; E=5e-13. (347 aa)
tadCProbable secretion system protein TadC; PMID: 10880436 best DB hits: BLAST: embl:CAB92604.1; (AL356813) putative integral membrane protein; E=6e-09 gb:AAK02931.1; (AE006123) TadC [Pasteurella multocida]; E=2e-08 pir:C83108; hypothetical protein PA4300 [imported] - Pseudomonas; E=3e-08 COG: PH0653; COG2064 Predicted membrane protein; E=3e-05. (328 aa)
RB9460Hypothetical protein; Best DB hits: BLAST: gb:AAF79368.1; AC007887_27 (AC007887) F15O4.40 [Arabidopsis; E=0.77. (79 aa)
RB9462Hypothetical protein. (76 aa)
RB9463Best DB hits: BLAST: pir:H69181; hypothetical protein MTH616 - Methanobacterium; E=4e-31 pir:H69125; hypothetical protein MTH210 - Methanobacterium; E=2e-30 gb:AAF35993.1; AC005836_5 (AC005836) 26S Protease Regulatory; E=0.42 COG: MTH616; COG0606 Predicted ATPases; E=4e-32 PFAM: PF00004; ATPase family associated with variou; E=0.039. (628 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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