STRINGSTRING
RB11109 RB11109 RB11110 RB11110 RB11303 RB11303 RB11305 RB11305 RB11308 RB11308 RB11309 RB11309 RB11310 RB11310 RB11311 RB11311 RB11312 RB11312 RB1286 RB1286 RB13189 RB13189 RB13190 RB13190 RB2182 RB2182 RB2185 RB2185 InsA InsA RB2187 RB2187 RB2188 RB2188 RB2190 RB2190 RB2191 RB2191 RB2193 RB2193 ydcC-3 ydcC-3 RB4106 RB4106 RB4107 RB4107 RB4111 RB4111 RB4112 RB4112 ydcC-2 ydcC-2 RB4114 RB4114 RB4301 RB4301 RB4302 RB4302 RB4303 RB4303 RB4826 RB4826 RB5367 RB5367 RB5368 RB5368 RB5369 RB5369 RB5370 RB5370 RB5371 RB5371 RB5866 RB5866 RB5867 RB5867 RB6011 RB6011 RB6012 RB6012 RB6013 RB6013 RB6014 RB6014 RB6016 RB6016 RB817 RB817 RB818 RB818 RB820 RB820 RB821 RB821 RB9900 RB9900 RB9902 RB9902 RB9903 RB9903 RB9904 RB9904 RB9905 RB9905 RB9907 RB9907
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB11109Hypothetical protein. (109 aa)
RB11110Similar to transposase; PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) putative transposase [Streptomyces; E=0.60. (309 aa)
RB11303Transposase homolog; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16. (464 aa)
RB11305Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF02424; ApbE family; E=0.71. (306 aa)
RB11308Hypothetical protein. (79 aa)
RB11309Hypothetical protein-transmembrane prediction. (62 aa)
RB11310Hypothetical protein. (82 aa)
RB11311Hypothetical protein. (61 aa)
RB11312Hypothetical protein. (388 aa)
RB1286Putative transposase; PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-62 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=5e-62 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=9e-62 PFAM: PF01811; Transposase; E=5.2e-67. (401 aa)
RB13189Transposase; PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)
RB13190Hypothetical protein. (50 aa)
RB2182Transposase; PMID: 8905231 best DB hits: BLAST: pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=1e-55 gb:AAB72024.1; (U38799) putative transposase [Synechocystis sp.]; E=7e-55 pir:S35005; probable transposase - Acetobacter xylinus insertion; E=1e-54 COG: sll1710; COG3293 Predicted transposase; E=9e-57 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31. (294 aa)
RB2185Hypothetical protein. (50 aa)
InsAInsA (transposase); Best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)
RB2187Hypothetical protein. (47 aa)
RB2188Hypothetical protein-transmembrane prediction. (135 aa)
RB2190Hypothetical protein-transmembrane prediction. (176 aa)
RB2191Hypothetical protein. (220 aa)
RB2193Conserved hypothetical protein; PMID: 11337471 best DB hits: BLAST: gb:AAK05788.1; AE006399_9 (AE006399) UNKNOWN PROTEIN [Lactococcus; E=1e-18. (284 aa)
ydcC-3H repeat-associated protein-putative transposase; PMID: 9097039 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65. (401 aa)
RB4106Hypothetical protein-transmembrane prediction. (490 aa)
RB4107Hypothetical protein. (42 aa)
RB4111Hypothetical protein. (135 aa)
RB4112Hypothetical protein. (45 aa)
ydcC-2H repeat-associated protein ydcC; PMID: 2542093 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65. (392 aa)
RB4114Hypothetical protein. (93 aa)
RB4301Hypothetical protein. (111 aa)
RB4302Hypothetical protein. (182 aa)
RB4303Conserved hypothetical protein-putative transposase; PMID: 11016950 best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=8e-22 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=8e-20 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=4e-15. (464 aa)
RB4826Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16. (464 aa)
RB5367Putative DNA recombinase; PMID: 2105293 best DB hits: BLAST: gb:AAG60934.1; AF322013_53 (AF322013) ID556 [Bradyrhizobium; E=9e-68 gb:AAG60822.1; AF322012_127 (AF322013) ID270 [Bradyrhizobium; E=4e-67 swissprot:P17867; CISA_BACSU PUTATIVE DNA RECOMBINASE -----; E=1e-30 COG: BS_spoIVCA; COG1961 Site-specific recombinases, DNA invertase Pin; E=1e-31 pin; COG1961 Site-specific recombinases, DNA invertase Pin homologs; E=4e-04 PH1174; COG1961 Site-specific recombinases, DNA invertase Pin; E=0.003 PFAM: PF00239; Resolvase class of site-specific re; E=4.3e-18. (580 aa)
RB5368Hypothetical protein. (65 aa)
RB5369Hypothetical protein. (86 aa)
RB5370Similar to transposase; PMID: 11759840 best DB hits: BLAST: embl:CAB93418.1; (AL357524) putative transposase [Streptomyces; E=0.60. (309 aa)
RB5371Hypothetical protein. (109 aa)
RB5866Transposase; PMID: 1662761 best DB hits: BLAST: gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-34 gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=4e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=2e-27. (441 aa)
RB5867Hypothetical protein. (50 aa)
RB6011Hypothetical protein. (50 aa)
RB6012Transposase; PMID: 1662761 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)
RB6013Hypothetical protein. (244 aa)
RB6014Hypothetical protein-signal peptide and transmembrane prediction. (146 aa)
RB6016Hypothetical protein. (188 aa)
RB817Hypothetical protein-transmembrane prediction. (143 aa)
RB818Reverse transcriptase/maturase; PMID: 8828137 best DB hits: BLAST: gb:AAC38715.1; (AF030367) maturase-related protein [Streptococcus; E=2e-46 ddbj:BAA90841.1; (AB031210) orf1; similar to E. coli ykfC; E=2e-45 ddbj:BAB03943.1; (AP001507) transposase (11) [Bacillus; E=2e-45 COG: BH0099; COG3344 Uncharacterized BCR; E=2e-46 PFAM: PF00078; Reverse transcriptase (RNA-dependen; E=2.5e-60. (459 aa)
RB820Hypothetical protein. (97 aa)
RB821Hypothetical protein. (105 aa)
RB9900Hypothetical protein-signal peptide and transmembrane prediction. (340 aa)
RB9902Hypothetical protein-putative chaperonine. (178 aa)
RB9903Hypothetical protein. (262 aa)
RB9904Hypothetical protein. (77 aa)
RB9905Probable transposase; Best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=5e-56 gb:AAD47597.1; AF144038_1 (AF144038) putative transposase; E=1e-55 pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=4e-55 COG: sll1710; COG3293 Predicted transposase; E=3e-56 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31. (291 aa)
RB9907InsA (transposase); Best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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