Your Input: | |
| | RB10065 | Conserved hypothetical protein-putative phosphohydrolase involved in signal transduction; Best DB hits: BLAST: ddbj:BAA82692.1; (AB013492) ORF14 [Bacillus halodurans] -----; E=4e-20 pir:D83132; hypothetical protein PA4108 [imported] - Pseudomonas; E=4e-17 pir:E71268; conserved hypothetical protein TP0912 - syphilis; E=4e-15 COG: BH0008; COG2206 HD-GYP domain; E=4e-21. (439 aa) |
| | RB1009 | Response regulator; PMID: 11123673 best DB hits: BLAST: pir:A75484; conserved hypothetical protein - Deinococcus radiodurans; E=2e-24 pir:D72252; conserved hypothetical protein - Thermotoga maritima; E=1e-23 embl:CAB89843.1; (AJ251547) response regulator [Xanthomonas; E=2e-23 COG: DR0719; COG2206 HD-GYP domain; E=2e-25 PFAM: PF01966; HD domain; E=7.2e-08. (332 aa) |
| | csrA | Probable CsrA_thema carbon storage regulator homolog; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (81 aa) |
| | RB10308 | Probable response regulatory protein; PMID: 9823893 PMID: 10984043 best DB hits: BLAST: pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=2e-21 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=6e-21 pir:E83183; probable two-component response regulator PA3702; E=1e-20 COG: VCA0697_3; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=6e-22 PFAM: PF00072; Response regulator receiver doma; E=5.4e-17 PF00990; GGDEF domain; E=7.2e-44. (308 aa) |
| | RB10322 | Two-component sensor histidine kinase; PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=5e-22 swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-21 pir:S70528; sensor protein pilS - Myxococcus xanthus -----gb:; E=2e-21 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=5e-23 PFAM: PF00785; PAC motif; E=0.099 PF00512; His Kinase A (phosphoacceptor) doma; E=7.9e-10 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.1e-33. (459 aa) |
| | RB10329 | Best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=2e-32 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=4e-32 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=5e-31 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=4e-33 PA5360; COG0745 Response regulators consisting of a CheY-like; E=9e-17 VC0622_4; COG0784 CheY-like receiver domains; E=2e-16 PFAM: PF00072; Response regulator receiver doma; E=6e-29 PF00069; Protein kinase domain; E=6.7e-52. (417 aa) |
| | RB10330 | Best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-69 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=1e-52 COG: PA4982; COG0642 Sensory transduction histidine kinases; E=4e-49 PFAM: PF00512; His Kinase A (phosphoacceptor) d; E=1.3e-22 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-46 PF00072; Response regulator receiver doma; E=6.2e-33. (860 aa) |
| | RB10479 | Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: pir:F70091; hypothetical protein yydH - Bacillus subtilis -----; E=2e-06 pir:H70326; hypothetical protein aq_294 - Aquifex aeolicus -----; E=0.29 PFAM: PF02163; Sterol-regulatory element bindi; E=0.039. (745 aa) |
| | RB10488 | PMID: 20572072 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-67 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-64 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=8e-61 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=7e-62 PFAM: PF00785; PAC motif; E=0.00076 PF00512; His Kinase A (phosphoacceptor) d; E=1.6e-28 PF02518; Histidine kinase-, DNA gyrase B-; E=1.6e-42. (871 aa) |
| | cheY | Best DB hits: BLAST: pir:G82805; two-component system, regulatory protein XF0450; E=5e-09 swissprot:P43501; PILH_PSEAE PILH PROTEIN ----- pir: S40035; E=3e-08 pir:F82618; chemotaxis-related protein kinase XF1952 [imported] -; E=6e-08 COG: XF0450; COG0784 CheY-like receiver domains; E=5e-10 PA2798; COG2204 AAA superfamily ATPases with N-terminal receiver; E=6e-08 BH1910_1; COG0784 CheY-like receiver domains; E=2e-07 PFAM: PF00072; Response regulator receiver doma; E=5.7e-25. (329 aa) |
| | flgK | PMID: 8158647 best DB hits: BLAST: pir:A81293; probable flagellar hook-associated protein Cj1466; E=8e-31 pir:G71853; flagellar hook-associated protein 1 (hap1) -; E=9e-29 gb:AAG61142.1; (AF333079) flagellar hook-associated protein 1; E=2e-28 COG: Cj1466; COG1256 Flagellar hook-associated protein; E=8e-32 PFAM: PF00460; Flagella basal body rod protein; E=7.7e-08. (584 aa) |
| | RB1066 | Hypothetical protein. (820 aa) |
| | RB10793 | Best DB hits: BLAST: pir:C83055; probable two-component response regulator PA4726; E=2e-58 gb:AAG59807.1; AF305914_2 (AF305914) HydG [Klebsiella oxytoca]; E=2e-58 pir:T08624; probable NtrC-type response regulator - Eubacterium; E=3e-58 COG: PA4726; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-59 PA2359; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-58 VC1926; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-57 PFAM: PF01590; GAF domain; E=1.1e-13 PF00158; Sigma-54 interaction domain; E=1e-128. (654 aa) |
| | RB10924 | Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1739 aa) |
| | ntrC | Nitrogen regulation protein NR(I); PMID: 7602583 PMID: 7827089 PMID: 10512705 PMID: 10622255 best DB hits: BLAST: pir:E83006; two-component response regulator NtrC PA5125 [imported]; E=9e-89 swissprot:P41789; NTRC_SALTY NITROGEN REGULATION PROTEIN NR(I); E=1e-85 gb:AAG59057.1; AE005617_6 (AE005617) response regulator for gln; E=2e-85 COG: PA5125; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-90 PFAM: PF00072; Response regulator receiver doma; E=1e-31 PF00158; Sigma-54 interaction domain; E=2.1e-114. (470 aa) |
| | ntrB | Probable nitrogen regulation protein ntrB; PMID: 7553451 best DB hits: BLAST: pir:A82630; two-component system, sensor protein XF1849 [imported] -; E=1e-11 pir:S35265; ntrB protein - Azospirillum brasilense ----- embl:; E=1e-11 swissprot:P45670; NTRB_AZOBR NITROGEN REGULATION PROTEIN NTRB; E=3e-11 COG: XF1849; COG0642 Sensory transduction histidine kinases; E=1e-12 PFAM: PF00672; HAMP domain; E=9.9e-11 PF00512; His Kinase A (phosphoacceptor) doma; E=0.00015 PF02518; Histidine kinase-, DNA gyrase B-, p; E=4.8e-20. (493 aa) |
| | cyaA | Adenylate cyclase homolog; PMID: 10952301 best DB hits: BLAST: pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=5e-17 pir:G82244; response regulator VC1087 [imported] - Vibrio cholerae; E=1e-15 ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=6e-14 COG: VC1087_1; COG0784 CheY-like receiver domains; E=2e-16 PA2881; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-12 VC1086_1; COG0784 CheY-like receiver domains; E=4e-11 PFAM: PF00072; Response regulator receiver doma; E=8e-19. (382 aa) |
| | RB11091 | Probable two-component sensor; PMID: 9045826 PMID: 10564511 best DB hits: BLAST: pir:F83324; probable two-component sensor PA2571 [imported] -; E=5e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=1e-35 pir:C82425; sensor histide kinase VCA0719 [imported] - Vibrio; E=2e-34 COG: PA2571; COG0642 Sensory transduction histidine kinases; E=5e-37 PFAM: PF00989; PAS domain; E=1.1e-06 PF00512; His Kinase A (phosphoacceptor) doma; E=0.001 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2.9e-30. (769 aa) |
| | RB11095 | Hypothetical protein-transmembrane prediction. (327 aa) |
| | RB11099 | Conserved hypothetical protein; PMID: 20365717 best DB hits: BLAST: pir:A82699; conserved hypothetical protein XF1304 [imported] -; E=4e-20 pir:T39090; probable integral membrane protein - fission yeast; E=1e-09 embl:CAB62252.1; (Y18559) hypothetical protein [Pichia farinosa]; E=2e-08 COG: XF1304; COG3163 Uncharacterized ACR; E=4e-21 BH0081; COG2966 Uncharacterized BCR; E=1e-06 MTH749; COG3163 Uncharacterized ACR; E=2e-04. (400 aa) |
| | hydH | Sensor kinase of the HydH/G two-component system; PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-23 gb:AAG09417.1; AF180147_9 (AF180147) bZIP histidine kinase TobS; E=5e-23 embl:CAB43735.1; (Y18245) bZIP histidine kinase [Pseudomonas; E=6e-23 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00072; Response regulator receiver doma; E=1.2e-21 PF00989; PAS domain; E=1e-08 PF00785; PAC motif; E=0.053. (488 aa) |
| | bfr | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (159 aa) |
| | RB11319 | Probable telomerase protein-1; Best DB hits: BLAST: gb:AAC53043.1; (U86137) telomerase protein-1 [Mus musculus]; E=2e-08 gb:AAB51690.1; (U89282) telomerase protein component 1 [Rattus; E=3e-06 gb:AAC51107.1; (U86136) telomerase-associated protein TP-1 [Homo; E=6e-06. (551 aa) |
| | RB11594 | Probable two-component response regulator; PMID: 7699720 best DB hits: BLAST: ddbj:BAB05983.1; (AP001514) two-component response regulator; E=2e-09 gb:AAF12879.1; AF022186_1 (AF022186) unknown [Cyanidium caldarium]; E=5e-09 gb:AAD47845.1; AF171076_1 (AF171076) probable CheY1 protein; E=6e-09 COG: BH2264; COG0745 Response regulators consisting of a CheY-like; E=2e-10 VCA1096; COG0784 CheY-like receiver domains; E=6e-10 HP1365; COG0745 Response regulators consisting of a CheY-like; E=1e-09 PFAM: PF00072; Response regulator receiver doma; E=6.6e-17. (168 aa) |
| | RB11604 | Sensory transduction histidine kinase; PMID: 11406410 PMID: 1574005 best DB hits: BLAST: pir:E83529; sensorresponse regulator hybrid PA0928 [imported] -; E=6e-47 pir:B82427; sensor protein TorS VCA0709 [imported] - Vibrio cholerae; E=1e-45 gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=8e-44 COG: PA0928; COG0642 Sensory transduction histidine kinases; E=6e-48 PFAM: PF00672; HAMP domain; E=3.8e-12 PF00512; His Kinase A (phosphoacceptor); E=2.4e-25 PF02518; Histidine kinase-, DNA gyrase; E=6.4e-40. (652 aa) |
| | RB11976 | PMID: 10984043 best DB hits: BLAST: pir:B83500; probable two-component response regulator PA1157; E=3e-51 pir:F82213; DNA-binding response regulator VC1320 [imported] -; E=4e-41 pir:C83420; probable two-component response regulator PA1799; E=3e-39 COG: PA1157; COG0745 Response regulators consisting of a CheY-like; E=3e-52 rstA; COG0745 Response regulators consisting of a CheY-like receiver; E=5e-34 BS_yclJ; COG0745 Response regulators consisting of a CheY-like; E=8e-34 PFAM: PF00072; Response regulator receiver doma; E=4e-27 PF00486; Transcriptional regulatory prote; E=2.7e-17. (237 aa) |
| | RB11986 | Histidine protein kinase homolog GacS; PMID: 10762268 best DB hits: BLAST: gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=3e-57 pir:E83212; probable sensorresponse regulator hybrid PA3462; E=4e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=8e-51 COG: PA3462; COG0642 Sensory transduction histidine kinases; E=3e-57 PFAM: PF00989; PAS domain; E=3.5e-07 PF00512; His Kinase A (phosphoacceptor; E=2.5e-21 PF02518; Histidine kinase-, DNA gyrase; E=6.8e-39. (1182 aa) |
| | RB12108 | Probable response regulatory protein (atoC); PMID: 9665876 PMID: 8346225 best DB hits: BLAST: ddbj:BAB06667.1; (AP001517) two-component response regulator in; E=2e-87 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-85 gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=5e-83 COG: BH2948; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-88 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-66 CT468; COG2204 AAA superfamily ATPases with N-terminal receiver; E=5e-66 PFAM: PF00072; Response regulator receiver doma; [...] (485 aa) |
| | flgI | Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (379 aa) |
| | flgH | Probable flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (301 aa) |
| | RB12178 | Similar to LfgA (potential lateral flagellar protein similar to FlgA); PMID: 10832645 best DB hits: BLAST: pir:C83227; hypothetical protein PA3350 [imported] - Pseudomonas; E=4e-04 gb:AAA97472.1; (U51896) LfgA [Vibrio parahaemolyticus]; E=0.012 COG: PA3350; COG1261 Flagellar basal body P-ring biosynthesis protein; E=4e-05. (477 aa) |
| | flgG | PMID: 2129540 best DB hits: BLAST: pir:C70372; flagellar hook basal body protein flgG - Aquifex; E=3e-55 pir:A64718; flagellar basal body rod protein flgG - Helicobacter; E=2e-51 pir:F71801; flagellar basal-body rod protein (distal rod protein) -; E=4e-51 COG: aq_834; COG1749 Flagellar basal body and hook proteins; E=2e-56 PFAM: PF00460; Flagella basal body rod protein; E=4.1e-13. (268 aa) |
| | flgF | FlgF; PMID: 10411267 best DB hits: BLAST: gb:AAB71784.1; (U95165) FlgF [Agrobacterium tumefaciens]; E=1e-17 ddbj:BAB06168.1; (AP001515) flagellar hook protein [Bacillus; E=1e-16 swissprot:Q06171; FLGF_CAUCR FLAGELLAR BASAL-BODY ROD PROTEIN FLGF; E=3e-16 COG: BH2449; COG1749 Flagellar basal body and hook proteins; E=1e-17 PFAM: PF00460; Flagella basal body rod protein; E=0.00036. (273 aa) |
| | RB12183 | Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:F82960; hypothetical protein PA5487 [imported] - Pseudomonas; E=8e-27 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=7e-22 pir:C83247; hypothetical protein PA3177 [imported] - Pseudomonas; E=2e-21 COG: PA5487; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=8e-28 PFAM: PF00990; GGDEF domain; E=2.8e-45. (585 aa) |
| | RB12326 | Sensory histidine protein kinase; PMID: 11406410 best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-45 pir:F83153; probable two-component sensor PA3946 [imported] -; E=3e-36 pir:E83265; probable two-component sensor PA3044 [imported] -; E=2e-35 COG: PA3044; COG0642 Sensory transduction histidine kinases; E=2e-36 PFAM: PF01590; GAF domain; E=3.2e-20 PF00989; PAS domain; E=1.2e-07 PF00512; His Kinase A (phosphoacceptor) d; E=4.8e-16. (718 aa) |
| | fliN | PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-04 swissprot:P15070; FLIN_ECOLI FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-04 COG: TM0680a; COG1886 Flagellar motor switch/type III secretory pathway; E=2e-06 PFAM: PF01052; Surface presentation of antigens (SP; E=2.3e-07. (144 aa) |
| | fliK | Similar to flagellar hook-length control protein FliK; PMID: 1828465 best DB hits: BLAST: ddbj:BAB06171.1; (AP001515) BH2452~unknown conserved protein; E=0.067 pir:T14405; small GTP-binding protein rab-1 - turnip -----gb:; E=0.076 swissprot:P23451; FLIK_BACSU PROBABLE FLAGELLAR HOOK-LENGTH; E=0.082 COG: BH2452; COG3144 Flagellar hook-length control protein; E=0.006. (576 aa) |
| | fliJ | Similar to flagellar FliJ protein; PMID: 1904439 best DB hits: BLAST: swissprot:P20487; FLIJ_BACSU FLAGELLAR FLIJ PROTEIN (CHEMOTAXIS; E=0.012 COG: BS_fliJ; COG2882 Flagellar biosynthesis chaperone; E=0.001. (160 aa) |
| | fliI | Flagellum-specific ATP synthase; PMID: 1828465 best DB hits: BLAST: pir:D72404; flagellum-specific ATP synthase - Thermotoga maritima; E=1e-108 ddbj:BAB06174.1; (AP001515) flagellar-specific ATP synthase; E=1e-106 swissprot:P23445; FLII_BACSU FLAGELLUM-SPECIFIC ATP SYNTHASE; E=1e-103 COG: TM0218; COG1157 Flagellar biosynthesis/type III secretory pathway; E=1e-109 atpD; COG0055 F0F1-type ATP synthase beta subunit; E=2e-37 PFAM: PF00005; ABC transporter; E=0.024 PF00006; ATP synthase alpha/beta family,; E=4e-131. (467 aa) |
| | RB12501 | Hypothetical protein; Best DB hits: PFAM: PF02361; Cobalt transport protein; E=0.17. (290 aa) |
| | fliG | Flagellar motor switch protein FliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=7e-08 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=6e-07 gb:AAF35852.1; AF220006_1 (AF220006) lateral flagellar motor; E=2e-06 COG: TM0220; COG1536 Flagellar motor switch protein; E=7e-09. (435 aa) |
| | RB12506 | Probable anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PMID: 9266669 best DB hits: BLAST: ddbj:BAB05255.1; (AP001512) anti-sigma F factor antagonist (stage; E=0.003 pir:S75220; hypothetical protein slr1912 - Synechocystis sp. (strain; E=0.024 COG: BH1536; COG1366 Anti-anti-sigma regulatory factor (antagonist of; E=3e-04 PFAM: PF01740; STAS domain; E=4.9e-06. (145 aa) |
| | RB12509 | Probable two-component sensor histidine kinase; PMID: 1528845 best DB hits: BLAST: pir:T30898; receptor-like histidine kinase - Rhodococcus erythropolis; E=6e-08 pir:T28694; hypothetical protein - Streptomyces coelicolor -----; E=1e-07 pir:T28655; receptor-like histidine kinase BpdS - Rhodococcus sp; E=2e-07 COG: narQ; COG0642 Sensory transduction histidine kinases; E=2e-08 PFAM: PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.9e-05. (235 aa) |
| | flgE | Flagellar hook protein FlgE; PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10. (811 aa) |
| | flgD | Probable basal-body rod modification protein FlgD; PMID: 8049271 best DB hits: BLAST: gb:AAG25963.1; AF300968_5 (AF300968) FlgD [Sinorhizobium meliloti]; E=2e-05 gb:AAF14369.1; AF133240_3 (AF133240) flagellar scaffolding protein; E=3e-05 gb:AAA97475.1; (U51896) LfgD [Vibrio parahaemolyticus]; E=4e-05 COG: PA1079; COG1843 Flagellar hook capping protein; E=8e-06. (164 aa) |
| | RB12571 | GGDEF family protein; PMID: 10567266 best DB hits: BLAST: pir:E75266; GGDEF family protein - Deinococcus radiodurans (strain; E=2e-27 gb:AAA87378.1; (L42554) pleD gene product [Caulobacter; E=2e-25 gb:AAD28578.1; AF121341_2 (AF121341) putative response regulator; E=3e-25 COG: DR2498; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-28 TM1594; COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); E=7e-21 yddV_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=9e-21 PFAM: PF00897; Orbivirus inner capsid protein VP7; E=0.89 PF00498; FHA domain; E=1.3e-19 PF [...] (346 aa) |
| | RB12646 | Probable histidine kinase; PMID: 8282725 best DB hits: BLAST: embl:CAB54579.1; (AJ006397) histidine kinase [Streptococcus; E=2e-10 gb:AAG59311.1; AE005644_5 (AE005644) sensor protein for basR; E=6e-10 pir:E83212; probable sensorresponse regulator hybrid PA3462; E=3e-09 COG: PA3462; COG0642 Sensory transduction histidine kinases; E=3e-10 PFAM: PF00512; His Kinase A (phosphoacceptor); E=2.1e-10 PF02518; Histidine kinase-, DNA gyrase B; E=6.2e-15. (497 aa) |
| | RB12766 | PMID: 11557134 best DB hits: BLAST: pir:C82181; conserved hypothetical protein VC1592 [imported] -; E=2e-15 pir:G70332; conserved hypothetical protein aq_367 - Aquifex aeolicus; E=6e-15 pir:D83238; hypothetical protein PA3258 [imported] - Pseudomonas; E=2e-13 COG: VC1592; COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL); E=1e-16 aq_367_3; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=6e-16 VC1641; COG2200 Diguanylate cyclase/phosphodiesterase domain 2 (EAL); E=2e-09 PFAM: PF00498; FHA domain; E=6.6e-15 PF00563; Domain of unknown function 2; E=3.1e-07. (371 aa) |
| | RB12942 | Hypothetical protein-transmembrane prediction. (500 aa) |
| | RB12945 | Conserved hypothetical protein-putative protein chain release factor B; PMID: 2215213 best DB hits: BLAST: swissprot:P45388; YAEJ_PSEPU HYPOTHETICAL 15.2 KD PROTEIN IN PCAJ; E=3e-16 embl:CAA63804.1; (X93605) hypothetical protein YAEJ [Zymomonas; E=7e-15 pir:A83538; conserved hypothetical protein PA0868 [imported] -; E=4e-12 COG: PA0868; COG1186 Protein chain release factor B; E=4e-13 sll1110; COG0216 Protein chain release factor A; E=0.010 PFAM: PF00472; Peptidyl-tRNA hydrolase domain; E=2.2e-09. (142 aa) |
| | RB12946 | Hypothetical protein; Best DB hits: PFAM: PF02151; UvrB/uvrC motif; E=0.0011. (244 aa) |
| | RB12949 | Histidine protein kinase; PMID: 8757734 best DB hits: BLAST: gb:AAB38420.1; (L39938) histidine protein kinase [Sinorhizobium; E=2e-16 pir:E83083; probable two-component sensor PA4494 [imported] -; E=3e-16 gb:AAA93222.1; (U22925) RegB [Rhodobacter sphaeroides]; E=2e-12 COG: PA4494; COG0642 Sensory transduction histidine kinases; E=2e-17 PFAM: PF00512; His Kinase A (phosphoacceptor; E=0.011 PF02518; Histidine kinase-, DNA gyrase; E=1.2e-28. (470 aa) |
| | RB12952 | Two-component system, regulatory protein; PMID: 7699720 best DB hits: BLAST: pir:D83083; probable two-component response regulator PA4493; E=8e-30 gb:AAF87208.1; AF228577_2 (AF228577) ActR [Rhizobium leguminosarum; E=8e-30 swissprot:Q52913; ACTR_RHIME ACID TOLERANCE REGULATORY PROTEIN; E=1e-29 COG: PA4493; COG0784 CheY-like receiver domains; E=8e-31 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-12 BH3787; COG0784 CheY-like receiver domains; E=8e-11 PFAM: PF00072; Response regulator receiver doma; E=2.9e-25. (221 aa) |
| | RB12953 | Hypothetical protein-signal peptide and transmembrane prediction. (261 aa) |
| | RB13112 | PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=1e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-57 pir:C82424; sensor histidine kinase LuxQ VCA0736 [imported] - Vibrio; E=8e-56 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=8e-57 PFAM: PF00785; PAC motif; E=0.34 PF00512; His Kinase A (phosphoacceptor) d; E=8.1e-23 PF02518; Histidine kinase-, DNA gyrase B-; E=3.6e-41. (697 aa) |
| | RB13175 | PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-67 pir:S75142; sensory transduction histidine kinase slr1759 -; E=2e-55 embl:CAA65047.1; (X95731) putative sensor kinase [Synechocystis; E=3e-55 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-50 PFAM: PF00989; PAS domain; E=0.011 PF00785; PAC motif; E=0.075 PF00989; PAS domain; E=0.46. (1122 aa) |
| | RB13181 | PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=8e-57 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=4e-49 embl:CAA37397.1; (X53315) arcB [Escherichia coli]; E=3e-48 COG: sll1353_2; COG0642 Sensory transduction histidine kinases; E=7e-43 PFAM: PF00785; PAC motif; E=0.1 PF00989; PAS domain; E=8.8e-05 PF00785; PAC motif; E=9.8e-08. (953 aa) |
| | fliP | Flagellar biosynthetic protein fliP-putative tr FT ansporter of flagellar proteins; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (336 aa) |
| | fliQ | Probable flagellar biosynthetic protein fliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (88 aa) |
| | fliR | PMID: 9683497 best DB hits: BLAST: gb:AAC32324.1; (AF044580) flagellar protein FliR [Rhodobacter; E=1e-14 pir:B83465; flagellar biosynthetic protein FliR PA1448 [imported] -; E=2e-13 pir:E81323; flagellar biosynthetic protein Cj1179c [imported] -; E=4e-12 COG: PA1448; COG1684 Flagellar biosynthesis/type III secretory pathway; E=2e-14 PFAM: PF01311; Bacterial export proteins, fami; E=7.9e-32. (264 aa) |
| | flhB | PMID: 8299954 best DB hits: BLAST: pir:I40395; flagellar biosynthetic protein FlhB - Bacillus subtilis; E=7e-51 swissprot:P35538; FLHB_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLHB; E=7e-51 pir:D72319; flagellar biosynthetic protein flhB TM0909 - Thermotoga; E=6e-46 COG: BS_flhB; COG1377 Flagellar biosynthesis/type III secretory pathway; E=6e-52 TM1672; COG2257 Uncharacterized BCR homologous to the cytoplasmic; E=9e-10 PFAM: PF01312; FlhB HrpN YscU SpaS Family; E=1.4e-91. (360 aa) |
| | RB1357 | Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=2e-26 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=5e-21 pir:G82209; GGDEF family protein VC1353 [imported] - Vibrio cholerae; E=8e-21 COG: aq_035_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-27 PFAM: PF00990; GGDEF domain; E=2.6e-46. (322 aa) |
| | RB159 | PMID: 11406410 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-63 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=8e-62 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-53 PFAM: PF00989; PAS domain; E=5.9e-05 PF00512; His Kinase A (phosphoacceptor); E=4.2e-24 PF02518; Histidine kinase-, DNA gyrase B; E=4.1e-43. (993 aa) |
| | RB161 | Response regulator; PMID: 7699720 best DB hits: BLAST: pir:G82211; response regulator VC1348 [imported] - Vibrio cholerae; E=4e-59 embl:CAB89843.1; (AJ251547) response regulator [Xanthomonas; E=2e-56 pir:S75132; sensory transduction system regulatory protein slr2100 -; E=1e-55 COG: VC1348_2; COG2206 HD-GYP domain; E=1e-42 PFAM: PF00072; Response regulator receiver doma; E=1.1e-29 PF01966; HD domain; E=0.003. (418 aa) |
| | RB1656 | Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:C83287; hypothetical protein PA2870 [imported] - Pseudomonas; E=4e-29 pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-26 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=9e-24 COG: PA2870; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=4e-30 TM1594; COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); E=1e-22 PA0290_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-22 PFAM: PF00989; PAS domain; E=2.5e-05 PF00990; GGDEF domain; E=5. [...] (875 aa) |
| | RB1711 | Probable two-component response regulator; PMID: 10984043 best DB hits: BLAST: ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=3e-17 pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=1e-16 embl:CAC01253.1; (AJ243734) putative hydrogenase transcriptional; E=1e-13 COG: PA2572; COG2204 AAA superfamily ATPases with N-terminal receiver; E=6e-13 VC1087_1; COG0784 CheY-like receiver domains; E=7e-10 VCA0142; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-08 PFAM: PF00072; Response regulator receiver doma; E=4.4e-17. (430 aa) |
| | RB1753 | Conserved hypothetical protein; PMID: 10960085 best DB hits: BLAST: embl:CAB95035.1; (AJ272497) orf4 [Bacillus anthracis]; E=9e-12 pir:B83036; probable bacterioferritin PA4880 [imported] -; E=0.005 pir:G82332; bacterioferritin VC0365 [imported] - Vibrio cholerae; E=0.019 COG: PA4880; COG2193 Bacterioferritin (cytochrome b1); E=5e-04. (153 aa) |
| | RB1759 | PMID: 10567266 best DB hits: BLAST: pir:E72220; conserved hypothetical protein - Thermotoga maritima; E=3e-39 pir:A75484; conserved hypothetical protein - Deinococcus radiodurans; E=1e-37 embl:CAB94603.1; (AL359214) putative integral membrane protein; E=2e-35 COG: DR0719; COG2206 HD-GYP domain; E=1e-38 PFAM: PF01590; GAF domain; E=0.4 PF01966; HD domain; E=1.8e-15. (432 aa) |
| | RB1764 | Conserved hypothetical protein-putative transcription regulator; Best DB hits: BLAST: gb:AAG59798.1; AF292097_4 (AF292097) SenB [Leptospira interrogans]; E=4e-06 gb:AAC23717.1; (AF031161) transcriptional activator [Pseudomonas; E=0.004 pir:C82379; response regulator VCA1086 [imported] - Vibrio cholerae; E=0.005 COG: VCA1086_2; COG2208 Serine phosphatase RsbU, regulator of sigma; E=5e-04 TP0995; COG0664 cAMP-binding domains - Catabolite gene activator and; E=0.002 PFAM: PF00072; Response regulator receiver doma; E=0.29 PF02518; Histidine kinase-, DNA gyrase B-; E=0.65. (318 aa) |
| | RB2008 | Signal-transducing histidine kinase; PMID: 9389475 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=4e-29 embl:CAB62662.1; (AL133422) putative two-component sensor; E=9e-24 swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=9e-22 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=3e-21 PFAM: PF00785; PAC motif; E=7.7e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=7.1e-09 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.1e-25. (452 aa) |
| | RB2621 | Phosphate regulon response regulator PhoB; PMID: 10629178 PMID: 3537313 PMID: 9878437 best DB hits: BLAST: gb:AAF15533.1; AF196490_3 (AF196490) phosphate regulon response; E=2e-35 swissprot:Q52990; PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL; E=2e-31 embl:CAA11074.1; (AJ223073) phosphate regulatory protein; E=9e-31 COG: PA5360; COG0745 Response regulators consisting of a CheY-like; E=5e-31 phoB; COG0745 Response regulators consisting of a CheY-like receiver; E=7e-31 TM1655; COG0745 Response regulators consisting of a CheY-like; E=1e-30 PFAM: PF00072; Response regulator receiver doma; [...] (229 aa) |
| | RB2728 | PMID: 8552028 best DB hits: BLAST: pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=4e-15 ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=1e-13 pir:S60595; FixL protein - Rhizobium leguminosarum ----- gb:; E=3e-13 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=3e-16 PFAM: PF00672; HAMP domain; E=2.9e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=3.2e-08 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.9e-33. (673 aa) |
| | RB2761 | Probable outer membrane protein A (OmpA); PMID: 1447140 PMID: 9742696 best DB hits: BLAST: gb:AAD40344.1; U88088_22 (U88088) OmpA [Pseudomonas alcaligenes]; E=5e-08 swissprot:Q10557; Y899_MYCTU HYPOTHETICAL 33.6 KDA PROTEIN RV0899; E=3e-07 gb:AAD39495.1; AF145799_1 (AF145799) immunogenic 23 kDa; E=1e-06 COG: Rv0899; COG2885 Outer membrane protein and related; E=2e-08 aq_1002; COG1360 Flagellar motor protein; E=2e-07 XF0363; COG2885 Outer membrane protein and related; E=1e-05 PFAM: PF01486; K-box region; E=0.5 PF00691; OmpA family; E=4.9e-06. (259 aa) |
| | RB2872 | Signal-transducing histidine kinase; PMID: 9278513 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=3e-31 swissprot:Q9LCC2; PHYA_ANASP CYANOBACTERIAL PHYTOCHROME A -----; E=3e-28 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-26 COG: slr0473_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00785; PAC motif; E=9.9e-06 PF00989; PAS domain; E=1.1e-07 PF00785; PAC motif; E=0.058. (659 aa) |
| | RB319 | Hypothetical protein. (95 aa) |
| | RB321 | Response regulator; PMID: 9741082 best DB hits: BLAST: embl:CAA05049.1; (AJ001848) TDIR [Thauera aromatica]; E=8e-28 gb:AAD12186.1; (U57900) putative DNA binding protein TutB1; E=1e-24 gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=4e-24 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-22 PA5511; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-15 uvrY; COG2197 Response regulators consisting of a CheY-like receiver; E=2e-10 PFAM: PF00072; Response regulator receiver doma; E=5.1e-23 PF00196; Bacterial regulatory proteins, l; E=5 [...] (251 aa) |
| | RB3251 | Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S76102; hypothetical protein slr0359 - Synechocystis sp. (strain; E=3e-99 pir:S76238; hypothetical protein sll0267 - Synechocystis sp. (strain; E=2e-89 pir:S77565; hypothetical protein slr2077 - Synechocystis sp. (strain; E=5e-88 COG: PA0575_4; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=1e-59 PFAM: PF00900; Ribosomal family S4e; E=0.72 PF00072; Response regulator receiver dom; E=3.8e-29 PF00785; PAC motif; E=0.054. (739 aa) |
| | RB3363 | Probable transcriptional regulatory protein fixJ; PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202; sensory transduction histidine kinase sll1687 -; E=1e-09 swissprot:Q46791; YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL; E=5e-07 swissprot:P23221; FIXJ_BRAJA TRANSCRIPTIONAL REGULATORY PROTEIN; E=5e-07 COG: sll1687_1; COG2202 PAS/PAC domain; E=1e-10 ygeK; COG2771 DNA-binding HTH domains; E=4e-08 sll0779_1; COG2202 PAS/PAC domain; E=2e-07 PFAM: PF00989; PAS domain; E=0.032 PF00785; PAC motif; E=4.6e-09 PF00196; Bacterial regulatory proteins, luxR; E=1.4e-19. (474 aa) |
| | RB3373 | PMID: 9098081 best DB hits: BLAST: pir:T28655; receptor-like histidine kinase BpdS - Rhodococcus sp; E=1e-60 pir:T30898; receptor-like histidine kinase - Rhodococcus erythropolis; E=1e-60 pir:S75136; sensory transduction histidine kinase slr2104 -; E=9e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-41 PFAM: PF00069; Protein kinase domain; E=8.1e-08 PF00515; TPR Domain; E=0.026 PF00512; His Kinase A (phosphoacceptor); E=1.4e-21. (1998 aa) |
| | fliD | Probable lateral flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (793 aa) |
| | atoC-5 | Acetoacetate metabolism regulatory protein atoC; PMID: 8346225 PMID: 9278503 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=8e-80 swissprot:P21712; YFHA_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=3e-75 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=4e-74 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-81 PFAM: PF00072; Response regulator receiver doma; E=5.1e-26 PF00158; Sigma-54 interaction domain; E=2.8e-114. (488 aa) |
| | atoS | Sensor protein atoS; PMID: 8346225 PMID: 9278503 best DB hits: BLAST: embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=3e-20 gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=1e-19 pir:G82495; probable C4-dicarboxylate transport sensor protein; E=7e-19 COG: VCA0141; COG0642 Sensory transduction histidine kinases; E=7e-20 PFAM: PF00989; PAS domain; E=0.031 PF00785; PAC motif; E=1.5e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-12. (410 aa) |
| | fliC | Flagellin E; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (718 aa) |
| | fliS | Similar to flagellar protein FliS; PMID: 10360571 best DB hits: BLAST: pir:F72286; flagellar protein FliS - Thermotoga maritima (strain; E=5e-05 COG: TM1179; COG1516 Flagellar protein; E=5e-06 PFAM: PF02561; Flagellar protein FliS; E=0.57. (163 aa) |
| | RB3779 | Putative histidine protein kinase; PMID: 10564511 best DB hits: BLAST: gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=7e-40 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=2e-38 pir:F83324; probable two-component sensor PA2571 [imported] -; E=2e-35 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=2e-39 slr1759_2; COG2202 PAS/PAC domain; E=1e-18 BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=1e-18 PFAM: PF00989; PAS domain; E=0.0067 PF00785; PAC motif; E=3.7e-09 PF00989; PAS domain; E=0.17. (1030 aa) |
| | RB3784 | Probable response regulator; PMID: 10952301 best DB hits: BLAST: pir:F82244; response regulator VC1086 [imported] - Vibrio cholerae; E=2e-13 ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=1e-12 pir:G82244; response regulator VC1087 [imported] - Vibrio cholerae; E=1e-11 COG: VC1087_1; COG0784 CheY-like receiver domains; E=1e-12 PA2881; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-10 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=5e-09 PFAM: PF00072; Response regulator receiver doma; E=5.1e-17. (151 aa) |
| | RB3792 | Sensor histidine kinase; PMID: 11157922 PMID: 10360571 best DB hits: BLAST: pir:C72228; sensor histidine kinase HpkA - Thermotoga maritima; E=1e-16 swissprot:P23545; PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR; E=2e-16 gb:AAF70313.1; AF260326_2 (AF260326) SrrB [Staphylococcus aureus]; E=3e-16 COG: TM1654_2; COG0642 Sensory transduction histidine kinases; E=1e-17 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1.8e-16 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2e-27. (378 aa) |
| | phoB | Probable regulatory components of sensory transduction system; PMID: 8905231 best DB hits: BLAST: embl:CAA11074.1; (AJ223073) phosphate regulatory protein; E=3e-11 pir:B70152; response regulatory protein (rrp-1) homolog - Lyme; E=1e-10 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=2e-10 COG: BB0419_1; COG0784 CheY-like receiver domains; E=1e-11 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-10 slr1305_1; COG0784 CheY-like receiver domains; E=3e-09 PFAM: PF00072; Response regulator receiver doma; E=1.4e-18. (146 aa) |
| | hydH-2 | Probable sensor protein (HYDH)-putative sensory transduction histidine kinases; PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=1e-13 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-13 pir:S70528; sensor protein pilS - Myxococcus xanthus ----- gb:; E=4e-13 COG: BH3477; COG0642 Sensory transduction histidine kinases; E=2e-13 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=2e-11 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2.9e-21. (470 aa) |
| | RB4179 | Ornithine decarboxylase inhibitor-putative sigma54 transciptional regulator; PMID: 8346225 best DB hits: BLAST: pir:A48291; ornithine decarboxylase inhibitor - Escherichia coli; E=4e-70 swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=4e-70 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=1e-69 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=4e-71 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-63 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-63 PFAM: PF00498; FHA domain; E=6.7e-16 [...] (757 aa) |
| | FliC | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (739 aa) |
| | ntrC-3 | Nitrogen assimilation regulatory protein; PMID: 7553451 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=1e-86 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-84 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=5e-84 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-87 PFAM: PF00072; Response regulator receiver dom; E=2e-29 PF00004; ATPase family associated with v; E=0.34 PF00158; Sigma-54 interaction domain; E=5.2e-129. (514 aa) |
| | RB4511 | Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1637 aa) |
| | atoS-2 | Sensor protein atoS; PMID: 8346225 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-26 gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=3e-25 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=1e-24 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00072; Response regulator receiver doma; E=2.2e-12 PF00989; PAS domain; E=1.6e-06 PF00785; PAC motif; E=0.00084. (509 aa) |
| | RB4759 | Sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL -----pir:; E=2e-48 swissprot:P23222; FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:; E=8e-45 swissprot:P10955; FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:; E=2e-43 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=3e-27 PFAM: PF00989; PAS domain; E=1.3e-13 PF00785; PAC motif; E=0.052 PF00512; His Kinase A (phosphoacceptor) doma; E=4.1e-09. (418 aa) |
| | RB4760 | Probable sporulation initiation phosphotransferase F; PMID: 3003689 PMID: 2997779 best DB hits: BLAST: pdb:1SRR; A Chain A, Crystal Structure Of A Phosphatase Resistant; E=3e-12 swissprot:P06628; SP0F_BACSU SPORULATION INITIATION; E=5e-12 pdb:1F51; E Chain E, A Transient Interaction Between Two; E=8e-12 COG: BS_spo0F; COG0784 CheY-like receiver domains; E=4e-13 PA4381; COG0745 Response regulators consisting of a CheY-like; E=5e-11 rcsC_3; COG0784 CheY-like receiver domains; E=5e-11 PFAM: PF00072; Response regulator receiver doma; E=2.5e-23 PF02310; B12 binding domain; E=0.14 PF00072; R [...] (252 aa) |
| | RB4994 | Osmolarity sensor protein envZ; PMID: 8063417 best DB hits: BLAST: pir:C83500; probable two-component sensor PA1158 [imported] -; E=6e-33 gb:AAG56596.1; AE005384_6 (AE005384) sensor histidine protein; E=2e-27 swissprot:P18392; RSTB_ECOLI SENSOR PROTEIN RSTB ----- pir:; E=2e-27 COG: PA1158; COG0642 Sensory transduction histidine kinases; E=6e-34 PFAM: PF00672; HAMP domain; E=8.4e-08 PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-15 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.2e-31. (433 aa) |
| | flgI-2 | Best DB hits: BLAST: pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=9e-07 gb:AAG09321.1; (AF178757) CpcF [Nostoc sp. PCC 7120]; E=0.10 pir:T44927; hypothetical protein orf398 [imported] - Anabaena sp; E=0.47 COG: TM1539; COG1706 Flagellar basal-body P-ring protein; E=9e-08. (576 aa) |
| | RB5465 | PMID: 7699720 best DB hits: BLAST: pir:D83041; probable two-component response regulator PA4843; E=4e-20 pir:F82960; hypothetical protein PA5487 [imported] - Pseudomonas; E=5e-18 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=4e-17 COG: PA5487; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=5e-19 PFAM: PF00072; Response regulator receiver doma; E=3.1e-13 PF00990; GGDEF domain; E=3.1e-35. (324 aa) |
| | RB5472 | Probable two-component system response regulator; PMID: 1454550 best DB hits: BLAST: embl:CAB94653.1; (AL359215) putative two-component system; E=3e-12 pir:D72374; response regulator - Thermotoga maritima (strain MSB8); E=2e-11 embl:CAC04498.1; (AL391588) putative two-component system; E=5e-11 COG: TM0468; COG0784 CheY-like receiver domains; E=2e-12 BS_phoP; COG0745 Response regulators consisting of a CheY-like; E=3e-11 slr0322_3; COG0784 CheY-like receiver domains; E=3e-10 PFAM: PF00072; Response regulator receiver doma; E=9.1e-23. (137 aa) |
| | RB5477 | Probable two component system response regulator; PMID: 1454550 best DB hits: BLAST: pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=2e-09 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=2e-08 pir:S75923; sensory transduction system regulatory protein sll1555 -; E=4e-08 COG: slr2024; COG0784 CheY-like receiver domains; E=9e-09 slr0115; COG0745 Response regulators consisting of a CheY-like; E=1e-08 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-08 PFAM: PF00072; Response regulator receiver doma; E=2.4e-10. (209 aa) |
| | RB5478 | Putative two-component system response regulator; PMID: 7699720 best DB hits: BLAST: embl:CAB88489.1; (AL353816) putative two-component systen; E=1e-15 gb:AAB06615.1; (U53173) MviA [Salmonella typhimurium]; E=2e-14 gb:AAD30120.2; (AF135389) DNA binding response regulator RpaA; E=1e-13 COG: slr0115; COG0745 Response regulators consisting of a CheY-like; E=1e-13 XF1952_3; COG0784 CheY-like receiver domains; E=3e-13 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=3e-12 PFAM: PF00072; Response regulator receiver doma; E=2.4e-27. (131 aa) |
| | RB5479 | Probable sensory transduction histidine kinase; PMID: 3142862 best DB hits: BLAST: swissprot:P23545; PHOR_BACSU ALKALINE PHOSPHATASE SYNTHESIS SENSOR; E=1e-28 pir:S75514; sensory transduction histidine kinase slr1324 -; E=2e-27 pir:E83529; sensorresponse regulator hybrid PA0928 [imported] -; E=6e-25 COG: BS_phoR_3; COG0642 Sensory transduction histidine kinases; E=1e-29 PFAM: PF00072; Response regulator receiver do; E=4.5e-14 PF00512; His Kinase A (phosphoacceptor); E=6.3e-16 PF02518; Histidine kinase-, DNA gyrase; E=5.3e-31. (574 aa) |
| | RB5482 | Probable response regulator; PMID: 7699720 best DB hits: BLAST: ddbj:BAA14000.1; (D89625) adenylate cyclase [Anabaena sp.]; E=2e-12 pir:T17197; adenylate cyclase homolog - Spirulina platensis -----; E=8e-12 gb:AAB89775.1; (AE001001) response regulator [Archaeoglobus; E=7e-10 COG: AF1473; COG0784 CheY-like receiver domains; E=7e-11 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-10 sll1555_1; COG0784 CheY-like receiver domains; E=6e-10 PFAM: PF00072; Response regulator receiver doma; E=2.3e-16. (218 aa) |
| | RB5622 | Hypothetical protein. (175 aa) |
| | fliG-2 | Flagellar motor switch protein fliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=3e-60 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=2e-57 swissprot:P23448; FLIG_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=5e-57 COG: TM0220; COG1536 Flagellar motor switch protein; E=3e-61 PFAM: PF01706; FliG C-terminal domain; E=7.8e-45. (349 aa) |
| | fliW | Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. (183 aa) |
| | flgL | Probable flagellar hook-associated protein 3; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (651 aa) |
| | RB5713 | Hypothetical protein. (54 aa) |
| | RB5715 | Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB69748.1; (AL137166) hypothetical protein SCC121.30c; E=0.009. (210 aa) |
| | RB5943 | Probable response regulator; PMID: 7699720 PMID: 1454550 best DB hits: BLAST: embl:CAA47908.1; (X67676) phoP [Bacillus subtilis]; E=1e-15 gb:AAA22661.1; (M16775) phoP protein (put.); putative [Bacillus; E=1e-15 swissprot:P13792; PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS; E=1e-15 COG: BS_phoP; COG0745 Response regulators consisting of a CheY-like; E=1e-16 sll0043_4; COG0784 CheY-like receiver domains; E=4e-15 Rv0757; COG0745 Response regulators consisting of a CheY-like; E=4e-15 PFAM: PF00072; Response regulator receiver doma; E=4.8e-28. (132 aa) |
| | RB5964 | Probable response regulatory protein; Best DB hits: BLAST: pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-28 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=3e-26 pir:E72220; conserved hypothetical protein - Thermotoga maritima; E=1e-24 COG: aq_035_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-29 TM1699_2; COG2206 HD-GYP domain; E=1e-24 aq_563_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-24 PFAM: PF01966; HD domain; E=6.6e-08 PF00989; PAS domain; E=0.032 PF00990; GGDEF domain; E=3.6e-53. (824 aa) |
| | RB6217 | Putative response regulator; PMID: 10376842 best DB hits: BLAST: gb:AAD28578.1; AF121341_2 (AF121341) putative response regulator; E=7e-27 gb:AAA87378.1; (L42554) pleD gene product [Caulobacter; E=3e-21 pir:S74913; sensory transduction system regulatory protein slr1400 -; E=4e-21 COG: slr1400_1; COG0784 CheY-like receiver domains; E=4e-20 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-19 VC0622_4; COG0784 CheY-like receiver domains; E=4e-19 PFAM: PF00072; Response regulator receiver doma; E=3.1e-37. (141 aa) |
| | RB6315 | Probable response-regulator; PMID: 8264528 best DB hits: BLAST: gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=5e-08 pir:S39902; nwsB protein - Bradyrhizobium japonicum -----embl:; E=5e-07 prf:2009374B; NwsB protein [Bradyrhizobium japonicum]; E=5e-07 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=1e-05 PFAM: PF01726; LexA DNA binding domain; E=0.74 PF00196; Bacterial regulatory proteins,; E=1.4e-12. (257 aa) |
| | RB6403 | Probable response regulator; PMID: 10910347 best DB hits: BLAST: pir:T34675; probable response regulator - Streptomyces coelicolor; E=1e-05 pir:A82535; transcription regulator LuxRUhpA family XF2608; E=4e-05 pir:T35105; probable two-component regulator - Streptomyces; E=7e-05 COG: XF2608; COG2197 Response regulators consisting of a CheY-like; E=4e-06 PA3420; COG2909 ATP-dependent transcriptional regulator; E=4e-04 PA3714; COG2197 Response regulators consisting of a CheY-like; E=4e-04 PFAM: PF00989; PAS domain; E=4.2e-06 PF00196; Bacterial regulatory proteins, luxR; E=3.1e-14. (304 aa) |
| | RB641 | Sensory histidine protein kinase; Best DB hits: BLAST: pir:G82753; two-component system, sensor protein XF0853 [imported] -; E=2e-41 gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=8e-39 pir:A82300; sensory box sensor histidine kinaseresponse regulator; E=4e-34 COG: XF0853; COG0642 Sensory transduction histidine kinases; E=2e-42 sll0779_1; COG2202 PAS/PAC domain; E=1e-23 VCA0736_1; COG0642 Sensory transduction histidine kinases; E=1e-23 PFAM: PF00785; PAC motif; E=8.5e-08 PF00989; PAS domain; E=0.013 PF00785; PAC motif; E=0.1. (1170 aa) |
| | RB6491 | RNA polymerase subunit sigma-54; PMID: 2203540 best DB hits: BLAST: gb:AAC82369.1; (AF061965) RNA polymerase subunit sigma-54; E=1e-121 gb:AAG58336.1; AE005548_7 (AE005548) RNA polymerase, sigma(54 or; E=7e-59 swissprot:P24255; RP54_ECOLI RNA POLYMERASE SIGMA-54 FACTOR; E=2e-58 COG: rpoN; COG1508 DNA-directed RNA polymerase specialized sigma; E=2e-59 PFAM: PF00356; Bacterial regulatory proteins; E=0.018 PF00309; Sigma-54 factors family; E=4e-155. (526 aa) |
| | RB6686 | Two-component response regulator; PMID: 10484179 PMID: 9878437 best DB hits: BLAST: ddbj:BAB06876.1; (AP001517) two-component response regulator; E=9e-39 gb:AAG43239.1; AF123314_2 (AF123314) putative response regulator; E=5e-38 gb:AAG09797.1; AF258346_2 (AF258346) response regulator RegX3; E=7e-38 COG: BH3157; COG0745 Response regulators consisting of a CheY-like; E=9e-40 phoB; COG0745 Response regulators consisting of a CheY-like receiver; E=5e-31 BH1580; COG0745 Response regulators consisting of a CheY-like; E=1e-30 PFAM: PF00072; Response regulator receiver doma; E=8.3e-31 PF00486; [...] (268 aa) |
| | RB6818 | PMID: 9665876 best DB hits: BLAST: pir:D71379; probable sensory transduction histidine kinase -; E=5e-23 embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=1e-21 pir:B69863; two-component sensor histidine kinase homolog ykrQ -; E=2e-21 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=6.1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=8.6e-32. (304 aa) |
| | fliC-2 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (685 aa) |
| | RB7123 | Probable response regulator; PMID: 10567266 best DB hits: BLAST: pir:D75276; response regulator - Deinococcus radiodurans (strain R1); E=4e-14 pir:A75522; response regulator - Deinococcus radiodurans (strain R1); E=8e-14 pir:D75617; response regulator - Deinococcus radiodurans (strain R1); E=4e-13 COG: DR2420; COG0784 CheY-like receiver domains; E=4e-15 sll0921; COG2197 Response regulators consisting of a CheY-like; E=1e-05 VC1349_3; COG0784 CheY-like receiver domains; E=3e-05 PFAM: PF00072; Response regulator receiver doma; E=5.6e-13. (147 aa) |
| | RB7190 | Conserved hypothetical protein-putative regulatory protein; PMID: 10360571 best DB hits: BLAST: pir:C72374; hypothetical protein TM0467 - Thermotoga maritima; E=3e-16 embl:CAB56681.1; (AL121596) hypothetical protein SCF51A.29c; E=2e-14 embl:CAC01561.1; (AL391039) conserved hypothetical protein; E=4e-14 COG: TM0467; COG2208 Serine phosphatase RsbU, regulator of sigma subunit; E=3e-17 Rv1827; COG1716 FHA-domain-containing proteins; E=1e-09 slr1860_2; COG2208 Serine phosphatase RsbU, regulator of sigma; E=4e-09 PFAM: PF00498; FHA domain; E=1.4e-20 PF01590; GAF domain; E=3.5e-17. (634 aa) |
| | RB7308 | Sensory box sensor histidine kinase; PMID: 20406833 best DB hits: BLAST: pir:H83285; probable two-component sensor PA2882 [imported] -; E=2e-36 pir:F83324; probable two-component sensor PA2571 [imported] -; E=3e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=7e-34 COG: PA2882; COG0642 Sensory transduction histidine kinases; E=2e-37 PFAM: PF00785; PAC motif; E=5.1e-05 PF00512; His Kinase A (phosphoacceptor); E=0.0012 PF02518; Histidine kinase-, DNA gyrase B; E=5.2e-32. (946 aa) |
| | fliM | Flagellar motor switch protein fliM; PMID: 96345631 PMID: 8755894 best DB hits: BLAST: swissprot:P74927; FLIM_TREPA FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=7e-47 swissprot:Q57511; FLIM_BORBU FLAGELLAR MOTOR SWITCH PROTEIN FLIM; E=5e-46 ddbj:BAB06165.1; (AP001515) flagellar motor switch protein; E=3e-44 COG: TP0721; COG1868 Flagellar motor switch protein; E=7e-48 PFAM: PF02154; Flagellar motor switch protein FliM; E=1.3e-68 PF01052; Surface presentation of antigens (S; E=0.19. (428 aa) |
| | RB7410 | Putative histidine kinase (PhoR1); Best DB hits: BLAST: embl:CAB37946.1; (AJ133131) putative histidine kinase (PhoR1); E=2e-43 swissprot:P35164; RESE_BACSU SENSOR PROTEIN RESE -----pir:; E=7e-40 embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=1e-38 COG: BH4026; COG0642 Sensory transduction histidine kinases; E=2e-39 PFAM: PF00989; PAS domain; E=0.0015 PF00512; His Kinase A (phosphoacceptor) doma; E=9.2e-20 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.3e-38. (445 aa) |
| | flgB | PMID: 20437337 PMID: 1905667 best DB hits: BLAST: pir:C83510; flagellar basal-body rod protein FlgB PA1077; E=0.002 gb:AAD19729.1; (AF124349) flagellar basal-body rod protein; E=0.020 gb:AAF14367.1; AF133240_1 (AF133240) flagellar proximal rod; E=0.034 COG: PA1077; COG1815 Flagellar basal body protein; E=1e-04. (188 aa) |
| | flgC | Flagellar basal-body rod potein FlgC; PMID: 2129540 PMID: 2404955 PMID: 11677608 best DB hits: BLAST: swissprot:Q57466; FLGC_BORBU FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=2e-18 gb:AAC45656.1; (U82214) FlgC [Proteus mirabilis]; E=4e-18 swissprot:P16438; FLGC_SALTY FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=1e-17 COG: BB0293; COG1558 Flagellar basal body rod protein; E=2e-19 PFAM: PF00460; Flagella basal body rod protein; E=0.001; Belongs to the flagella basal body rod proteins family. (143 aa) |
| | fliE | PMID: 1905667 best DB hits: BLAST: pir:G72263; flagellar hook-basal body complex protein FliE -; E=7e-05 swissprot:O67242; FLIE_AQUAE FLAGELLAR HOOK-BASAL BODY COMPLEX; E=1e-04 pir:E64714; flagellar hook-basal body complex protein - Helicobacter; E=0.002 COG: TM1366; COG1677 Flagellar hook-basal body protein; E=7e-06 PFAM: PF02049; Flagellar hook-basal body complex pr; E=1.9e-12. (139 aa) |
| | fliF | Probable polar flagellar M-ring protein FliF; PMID: 20115548 PMID: 10648530 best DB hits: BLAST: gb:AAD15920.1; (AF069392) polar flagellar M-ring protein FliF; E=6e-04 swissprot:Q53151; FLIF_RHOSH FLAGELLAR M-RING PROTEIN -----; E=0.001 swissprot:O67241; FLIF_AQUAE FLAGELLAR M-RING PROTEIN -----; E=0.002 COG: aq_1182; COG1766 Flagellar biosynthesis/type III secretory pathway; E=2e-04 PFAM: PF01514; Secretory protein of YscJ/FliF fa; E=0.00027. (545 aa) |
| | RB7461 | Probable sensor kinase; Best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-07 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=8e-07 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-06 COG: VCA0142; COG2204 AAA superfamily ATPases with N-terminal receiver; E=7e-07 BB0570; COG0784 CheY-like receiver domains; E=6e-06 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=9e-06 PFAM: PF01590; GAF domain; E=6.1e-16 PF00072; Response regulator receiver doma; E=7.9e-12. (614 aa) |
| | rpfC | Best DB hits: BLAST: pir:S75525; sensory transduction histidine kinase sll1228 -; E=3e-62 pir:S75136; sensory transduction histidine kinase slr2104 -; E=5e-60 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=1e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=9e-60 PFAM: PF00989; PAS domain; E=0.025 PF00785; PAC motif; E=0.012 PF00989; PAS domain; E=7.5e-05. (865 aa) |
| | hydH-3 | Sensor protein HYDH; PMID: 2666400 best DB hits: BLAST: swissprot:P14377; HYDH_ECOLI SENSOR PROTEIN HYDH ----- pir:; E=5e-19 gb:AAG59200.1; AE005632_1 (AE005632) sensor kinase for HydG,; E=6e-18 swissprot:P07168; VIRA_AGRT6 WIDE HOST RANGE VIRA PROTEIN (WHR; E=6e-18 COG: hydH; COG0642 Sensory transduction histidine kinases; E=5e-20 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-06 PF02518; Histidine kinase-, DNA gyrase B-, p; E=4e-35. (279 aa) |
| | csrA-2 | Probable global regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (189 aa) |
| | atoC-6 | PMID: 8346225 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=2e-88 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=6e-87 gb:AAF18103.1; AF204400_3 (AF204400) FrgC [Myxococcus xanthus]; E=5e-82 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-89 PFAM: PF00072; Response regulator receiver doma; E=3.9e-32 PF00005; ABC transporter; E=0.86 PF00004; ATPase family associated with va; E=5.1e-06. (485 aa) |
| | RB787 | Similar to transposase; PMID: 11325940 best DB hits: BLAST: ddbj:BAA89624.1; (AB036665) similar to transposase of Tn5; E=0.043 embl:CAA23888.1; (V00615) open reading frame [Escherichia coli]; E=0.17 embl:CAA23891.1; (V00617) open reading frame [Escherichia coli]; E=0.17 PFAM: PF01609; Transposase (IS4 family); E=0.079. (403 aa) |
| | RB8077 | Hypothetical protein-signal peptide and transmembrane prediction. (563 aa) |
| | csrA-3 | Probable carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (70 aa) |
| | RB8274 | Sensor protein atoS; PMID: 8346225 PMID: 9097040 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS -----pir:; E=2e-17 gb:AAD47419.1; AF100457_2 (AF100457) histidine kinase [Myxococcus; E=2e-16 ddbj:BAB04255.1; (AP001508) two-component sensor histidine kinase; E=3e-14 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=2e-18 Rv1827; COG1716 FHA-domain-containing proteins; E=1e-08 PA2882; COG0642 Sensory transduction histidine kinases; E=2e-08 PFAM: PF00498; FHA domain; E=3.2e-19 PF01590; GAF domain; E=4.8e-18 PF00512; His Kinase A (phosphoacceptor) doma; E [...] (623 aa) |
| | whiG | RNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (272 aa) |
| | flhF | PMID: 1447978 best DB hits: BLAST: pir:B72319; flagellar biosynthesis protein FlhF - Thermotoga; E=9e-32 ddbj:BAB06156.1; (AP001515) flagella-associated protein [Bacillus; E=3e-22 swissprot:Q01960; FLHF_BACSU FLAGELLAR BIOSYNTHESIS PROTEIN FLHF; E=2e-21 COG: TM0907; COG1419 Flagellar GTP-binding protein; E=8e-33 AF0622; COG0541 Signal recognition particle GTPase; E=3e-09 PFAM: PF00005; ABC transporter; E=0.018 PF00931; NB-ARC domain; E=0.2 PF00004; ATPase family associated with va; E=0.13. (464 aa) |
| | flhA | Flagella-associated protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (687 aa) |
| | RB8873 | PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-56 pir:S75525; sensory transduction histidine kinase sll1228 -; E=4e-50 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=5e-46 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-43 PFAM: PF00785; PAC motif; E=0.00017 PF00512; His Kinase A (phosphoacceptor; E=1.1e-25 PF02518; Histidine kinase-, DNA gyrase; E=8.9e-44. (801 aa) |
| | RB9260 | Similar to sdrC-putative serine-aspartate (SD) repeat-containing protein; PMID: 9884231 best DB hits: BLAST: embl:CAA06650.1; (AJ005645) sdrc [Staphylococcus aureus]; E=0.21. (426 aa) |
| | RB9266 | Hypothetical protein. (132 aa) |
| | flbD | Probable flagellar protein (flbD) homolog; Best DB hits: BLAST: pir:A72347; hypothetical protein TM0675 - Thermotoga maritima; E=1e-08 ddbj:BAB06167.1; (AP001515) BH2448~unknown conserved protein in; E=4e-05 pir:B70135; flagellar protein (flbD) homolog - Lyme disease; E=3e-04 COG: TM0675; COG1582 Uncharacterized protein, possibly involved in; E=1e-09. (81 aa) |
| | pomA | Chemotaxis pomA protein; PMID: 99254111 best DB hits: BLAST: swissprot:P46826; YTXD_BACME HYPOTHETICAL 29.3 KD PROTEIN IN CCPA; E=9e-35 swissprot:O06873; POMA_VIBAL CHEMOTAXIS POMA PROTEIN -----; E=2e-31 gb:AAD15904.1; (AF069391) sodium-driven polar flagellar protein; E=3e-31 COG: BS_ytxD; COG1291 Flagellar motor component; E=5e-32 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=0.0002. (253 aa) |
| | motB | Probable MotB homolog; PMID: 7934817 PMID: 9387221 PMID: 1447140 best DB hits: BLAST: swissprot:P39064; YTXE_BACSU HYPOTHETICAL 27.6 KD PROTEIN IN ACUC; E=2e-10 gb:AAB94398.1; (U91841) MotB homolog [Bacillus firmus]; E=3e-09 ddbj:BAB06958.1; (AP001518) BH3239~unknown conserved protein; E=2e-07 COG: BS_ytxE; COG1360 Flagellar motor protein; E=2e-11 PA0973; COG2885 Outer membrane protein and related; E=5e-05 PFAM: PF00691; OmpA family; E=1.4e-11. (251 aa) |
| | RB9273 | Similar to dihydrolipoamide acetyltransferase; PMID: 10368162 best DB hits: BLAST: gb:AAC05584.1; (AF006075) dihydrolipoamide acetyltransferase; E=0.090 swissprot:O31550; ACOC_BACSU DIHYDROLIPOAMIDE ACETYLTRANSFERASE; E=0.090 COG: BS_acoC; COG0508 Dihydrolipoamide acyltransferases; E=0.009. (185 aa) |
| | fliN-2 | Flagellar motor switch protein fliN (fragment); PMID: 2656645 PMID: 2651416 best DB hits: BLAST: swissprot:P35539; FLIN_ERWCA FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=5e-16 swissprot:P24073; FLIY_BACSU FLAGELLAR MOTOR SWITCH PROTEIN FLIY; E=8e-16 swissprot:P26419; FLIN_SALTY FLAGELLAR MOTOR SWITCH PROTEIN FLIN; E=2e-15 COG: BS_fliY_2; COG1886 Flagellar motor switch/type III secretory pathway; E=6e-17 PFAM: PF01052; Surface presentation of antigens (SP; E=2.5e-25. (141 aa) |
| | RB9276 | Flagellar protein; Best DB hits: BLAST: swissprot:P49080; AKH2_MAIZE BIFUNCTIONAL ASPARTOKINASEHOMOSERINE; E=0.43. (233 aa) |
| | RB9418 | Signal-transducing histidine kinase; Best DB hits: BLAST: swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=5e-32 gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=7e-28 pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=5e-25 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=5e-26 PFAM: PF00989; PAS domain; E=1.5e-06 PF00785; PAC motif; E=0.00034 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-11. (734 aa) |
| | msaB | ABC transporter (ATP-binding protein) homolog ygaD; PMID: 8094880 PMID: 9575204 PMID: 11546864 best DB hits: BLAST: pir:G69815; ABC transporter (ATP-binding protein) homolog ygaD -; E=7e-74 ddbj:BAB04660.1; (AP001510) ABC transporter (ATP-binding protein); E=3e-66 swissprot:P27299; MSBA_ECOLI PROBABLE TRANSPORT ATP-BINDING; E=6e-65 COG: BS_ygaD; COG1132 ABC-type multidrug/protein/lipid transport system,; E=7e-75 PFAM: PF00664; ABC transporter transmembrane re; E=1.7e-13 PF01583; Adenylylsulfate kinase; E=0.7 PF01202; Shikimate kinase; E=0.27. (663 aa) |
| | RB9427 | Hypothetical protein containing vWFA domain; Best DB hits: BLAST: pir:T47637; hypothetical protein T5N23.140 - Arabidopsis thaliana; E=5e-20 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=2e-18 swissprot:P76481; YFBK_ECOLI HYPOTHETICAL 63.6 KD PROTEIN IN; E=3e-18 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=2e-19 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=3e-19 PFAM: PF00092; von Willebrand factor type A domain; E=4.8e-06. (484 aa) |
| | RB9428 | Probable two-component sensor histidine kinase VicK; Best DB hits: BLAST: embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=2e-15 pir:C72228; sensor histidine kinase HpkA - Thermotoga maritima; E=5e-15 ddbj:BAB05664.1; (AP001513) two-component sensor histidine kinase; E=5e-15 COG: TM1654_2; COG0642 Sensory transduction histidine kinases; E=5e-16 PFAM: PF00193; Extracellular link domain; E=0.19 PF00512; His Kinase A (phosphoacceptor) doma; E=2.9e-16 PF02518; Histidine kinase-, DNA gyrase B-, p; E=6.3e-27. (565 aa) |
| | cheY-3 | Two-component system response regulator; PMID: 1454550 best DB hits: BLAST: embl:CAB90891.1; (AL355753) two-component system response; E=4e-40 swissprot:P37478; YYCF_BACSU HYPOTHETICAL 27.2 KD SENSORY; E=5e-40 gb:AAD10263.1; (AF036966) putative response regulator; E=9e-40 COG: BS_yycF; COG0745 Response regulators consisting of a CheY-like; E=5e-41 ompR; COG0745 Response regulators consisting of a CheY-like receiver; E=8e-37 TM1655; COG0745 Response regulators consisting of a CheY-like; E=7e-36 PFAM: PF00072; Response regulator receiver doma; E=3.9e-38 PF00486; Transcriptional regulator [...] (239 aa) |
| | RB9432 | Hypothetical protein-signal peptide prediction. (269 aa) |
