Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FliC | RB12178 | RB4454 | RB12178 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Similar to LfgA (potential lateral flagellar protein similar to FlgA); PMID: 10832645 best DB hits: BLAST: pir:C83227; hypothetical protein PA3350 [imported] - Pseudomonas; E=4e-04 gb:AAA97472.1; (U51896) LfgA [Vibrio parahaemolyticus]; E=0.012 COG: PA3350; COG1261 Flagellar basal body P-ring biosynthesis protein; E=4e-05. | 0.604 |
| FliC | RB12501 | RB4454 | RB12501 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Hypothetical protein; Best DB hits: PFAM: PF02361; Cobalt transport protein; E=0.17. | 0.536 |
| FliC | RB9276 | RB4454 | RB9276 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar protein; Best DB hits: BLAST: swissprot:P49080; AKH2_MAIZE BIFUNCTIONAL ASPARTOKINASEHOMOSERINE; E=0.43. | 0.808 |
| FliC | flgB | RB4454 | RB7442 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | PMID: 20437337 PMID: 1905667 best DB hits: BLAST: pir:C83510; flagellar basal-body rod protein FlgB PA1077; E=0.002 gb:AAD19729.1; (AF124349) flagellar basal-body rod protein; E=0.020 gb:AAF14367.1; AF133240_1 (AF133240) flagellar proximal rod; E=0.034 COG: PA1077; COG1815 Flagellar basal body protein; E=1e-04. | 0.812 |
| FliC | flgC | RB4454 | RB7443 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar basal-body rod potein FlgC; PMID: 2129540 PMID: 2404955 PMID: 11677608 best DB hits: BLAST: swissprot:Q57466; FLGC_BORBU FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=2e-18 gb:AAC45656.1; (U82214) FlgC [Proteus mirabilis]; E=4e-18 swissprot:P16438; FLGC_SALTY FLAGELLAR BASAL-BODY ROD PROTEIN FLGC; E=1e-17 COG: BB0293; COG1558 Flagellar basal body rod protein; E=2e-19 PFAM: PF00460; Flagella basal body rod protein; E=0.001; Belongs to the flagella basal body rod proteins family. | 0.942 |
| FliC | flgD | RB4454 | RB12514 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Probable basal-body rod modification protein FlgD; PMID: 8049271 best DB hits: BLAST: gb:AAG25963.1; AF300968_5 (AF300968) FlgD [Sinorhizobium meliloti]; E=2e-05 gb:AAF14369.1; AF133240_3 (AF133240) flagellar scaffolding protein; E=3e-05 gb:AAA97475.1; (U51896) LfgD [Vibrio parahaemolyticus]; E=4e-05 COG: PA1079; COG1843 Flagellar hook capping protein; E=8e-06. | 0.830 |
| FliC | flgE | RB4454 | RB12513 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar hook protein FlgE; PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10. | 0.988 |
| FliC | flgF | RB4454 | RB12181 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | FlgF; PMID: 10411267 best DB hits: BLAST: gb:AAB71784.1; (U95165) FlgF [Agrobacterium tumefaciens]; E=1e-17 ddbj:BAB06168.1; (AP001515) flagellar hook protein [Bacillus; E=1e-16 swissprot:Q06171; FLGF_CAUCR FLAGELLAR BASAL-BODY ROD PROTEIN FLGF; E=3e-16 COG: BH2449; COG1749 Flagellar basal body and hook proteins; E=1e-17 PFAM: PF00460; Flagella basal body rod protein; E=0.00036. | 0.899 |
| FliC | flgG | RB4454 | RB12180 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | PMID: 2129540 best DB hits: BLAST: pir:C70372; flagellar hook basal body protein flgG - Aquifex; E=3e-55 pir:A64718; flagellar basal body rod protein flgG - Helicobacter; E=2e-51 pir:F71801; flagellar basal-body rod protein (distal rod protein) -; E=4e-51 COG: aq_834; COG1749 Flagellar basal body and hook proteins; E=2e-56 PFAM: PF00460; Flagella basal body rod protein; E=4.1e-13. | 0.896 |
| FliC | flgH | RB4454 | RB12175 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Probable flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.767 |
| FliC | flgI | RB4454 | RB12174 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.837 |
| FliC | flgK | RB4454 | RB10644 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | PMID: 8158647 best DB hits: BLAST: pir:A81293; probable flagellar hook-associated protein Cj1466; E=8e-31 pir:G71853; flagellar hook-associated protein 1 (hap1) -; E=9e-29 gb:AAG61142.1; (AF333079) flagellar hook-associated protein 1; E=2e-28 COG: Cj1466; COG1256 Flagellar hook-associated protein; E=8e-32 PFAM: PF00460; Flagella basal body rod protein; E=7.7e-08. | 0.949 |
| FliC | flhA | RB4454 | RB8323 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagella-associated protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.933 |
| FliC | flhB | RB4454 | RB1347 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | PMID: 8299954 best DB hits: BLAST: pir:I40395; flagellar biosynthetic protein FlhB - Bacillus subtilis; E=7e-51 swissprot:P35538; FLHB_BACSU FLAGELLAR BIOSYNTHETIC PROTEIN FLHB; E=7e-51 pir:D72319; flagellar biosynthetic protein flhB TM0909 - Thermotoga; E=6e-46 COG: BS_flhB; COG1377 Flagellar biosynthesis/type III secretory pathway; E=6e-52 TM1672; COG2257 Uncharacterized BCR homologous to the cytoplasmic; E=9e-10 PFAM: PF01312; FlhB HrpN YscU SpaS Family; E=1.4e-91. | 0.913 |
| FliC | fliC | RB4454 | RB3742 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellin E; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.903 |
| FliC | fliC-2 | RB4454 | RB6996 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.904 |
| FliC | fliD | RB4454 | RB3453 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Probable lateral flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.952 |
| FliC | fliE | RB4454 | RB7444 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | PMID: 1905667 best DB hits: BLAST: pir:G72263; flagellar hook-basal body complex protein FliE -; E=7e-05 swissprot:O67242; FLIE_AQUAE FLAGELLAR HOOK-BASAL BODY COMPLEX; E=1e-04 pir:E64714; flagellar hook-basal body complex protein - Helicobacter; E=0.002 COG: TM1366; COG1677 Flagellar hook-basal body protein; E=7e-06 PFAM: PF02049; Flagellar hook-basal body complex pr; E=1.9e-12. | 0.722 |
| FliC | fliF | RB4454 | RB7445 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Probable polar flagellar M-ring protein FliF; PMID: 20115548 PMID: 10648530 best DB hits: BLAST: gb:AAD15920.1; (AF069392) polar flagellar M-ring protein FliF; E=6e-04 swissprot:Q53151; FLIF_RHOSH FLAGELLAR M-RING PROTEIN -----; E=0.001 swissprot:O67241; FLIF_AQUAE FLAGELLAR M-RING PROTEIN -----; E=0.002 COG: aq_1182; COG1766 Flagellar biosynthesis/type III secretory pathway; E=2e-04 PFAM: PF01514; Secretory protein of YscJ/FliF fa; E=0.00027. | 0.841 |
| FliC | fliG | RB4454 | RB12502 | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar motor switch protein FliG; PMID: 10440379 best DB hits: BLAST: swissprot:Q9WY63; FLIG_THEMA FLAGELLAR MOTOR SWITCH PROTEIN FLIG; E=7e-08 pir:G71328; probable flagellar motor switch protein (fliG-2) -; E=6e-07 gb:AAF35852.1; AF220006_1 (AF220006) lateral flagellar motor; E=2e-06 COG: TM0220; COG1536 Flagellar motor switch protein; E=7e-09. | 0.797 |
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