STRINGSTRING
RB331 RB331 RB334 RB334 RB7406 RB7406 ctpA-2 ctpA-2 RB7409 RB7409 RB7411 RB7411 RB7412 RB7412
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB331Hypothetical protein-transmembrane prediction. (674 aa)
RB334Copper-transporting ATPase; PMID: 8490659 best DB hits: BLAST: gb:AAD11750.1; (AF067954) putative cation transporting P-type; E=0.0 swissprot:Q9X5V3; ATCU_RHILV COPPER-TRANSPORTING ATPASE -----; E=0.0 embl:CAC07984.1; (AJ278983) CopF Cu-ATPase [Ralstonia; E=1e-180 COG: sll1920; COG2217 Cation transport ATPases; E=1e-150 PFAM: PF00122; E1-E2 ATPase; E=1.8e-93 PF00702; haloacid dehalogenase-like hyd; E=1.8e-32. (807 aa)
RB7406Hypothetical protein-signal peptide and transmembrane prediction. (130 aa)
ctpA-2Carboxyl-terminal proteinase; PMID: 98196666 best DB hits: BLAST: pir:F70369; carboxyl-terminal proteinase - Aquifex aeolicus -----; E=4e-49 swissprot:Q44879; CTPA_BARBA CARBOXY-TERMINAL PROCESSING PROTEASE; E=7e-49 pir:B83005; probable carboxyl-terminal proteinase PA5134 [imported]; E=7e-47 COG: aq_797; COG0793 Periplasmic protease; E=3e-50 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=0.0011; Belongs to the peptidase S41A family. (495 aa)
RB7409Hypothetical protein. (77 aa)
RB7411Hypothetical protein. (58 aa)
RB7412Hypothetical protein-transmembrane prediction. (128 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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