STRINGSTRING
RB142 RB142 RB144 RB144 RB146 RB146 RB149 RB149 RB150 RB150 RB152 RB152 RB154 RB154 RB1677 RB1677 czcB-2 czcB-2 RB1685 RB1685 RB1688 RB1688 RB2651 RB2651 RB2654 RB2654 RB2656 RB2656 aprF aprF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB142Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00364; Biotin-requiring enzyme; E=0.031 PF00529; HlyD family secretion protein; E=0.78. (751 aa)
RB144Probable membrane-fusion protein; Best DB hits: BLAST: pir:T31342; ragD protein - Bradyrhizobium japonicum ----- embl:; E=1e-05 pir:B83186; probable RND efflux membrane fusion protein precursor; E=2e-04 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.001 COG: PA3677; COG0845 Membrane-fusion protein; E=2e-05 PA2836; COG1566 Multidrug resistance efflux pump; E=0.001 VC0165; COG0845 Membrane-fusion protein; E=0.002 PFAM: PF00364; Biotin-requiring enzyme; E=0.021. (467 aa)
RB146Probable cation efflux system; PMID: 8203018 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=2e-10 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=3e-10 ddbj:BAA34299.1; (AB015853) MexX [Pseudomonas aeruginosa]; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=2e-11 emrA; COG1566 Multidrug resistance efflux pump; E=0.003 PA3402; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF00364; Biotin-requiring enzyme; E=0.0052 PF00529; HlyD family secretion protein; E=6.1e-07; Belongs to the membrane fusion protein (MFP) (TC 8.A.1 [...] (295 aa)
RB149Probable outer membrane channel protein; PMID: 9852029 best DB hits: BLAST: gb:AAD12177.1; (AF029405) outer membrane channel protein; E=0.001 gb:AAD30205.1; (AF094824) IbeB [Escherichia coli]; E=0.039 swissprot:Q51487; OPRM_PSEAE OUTER MEMBRANE PROTEIN OPRM PRECURSOR; E=0.049 COG: PA0427; COG1538 Outer membrane protein; E=0.005 PFAM: PF02321; Outer membrane efflux protein; E=0.0013. (672 aa)
RB150Hypothetical protein. (96 aa)
RB152Hypothetical protein. (56 aa)
RB154Lipoprotein receptor-related protein; PMID: 6091915 best DB hits: BLAST: pir:S75200; fat protein - Synechocystis sp. (strain PCC 6803) -----; E=7e-24 ddbj:BAA88688.1; (AB011533) MEGF7 [Rattus norvegicus]; E=3e-18 ddbj:BAA32468.1; (AB011540) MEGF7 [Homo sapiens]; E=2e-17 COG: sll0656_1; COG3204 Uncharacterized BCR; E=5e-14 PFAM: PF00058; Low-density lipoprotein receptor; E=6.3e-06 PF00028; Cadherin domain; E=0.036 PF00801; PKD domain; E=0.073. (2515 aa)
RB1677Hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.9e-09. (688 aa)
czcB-2PMID: 9537320 best DB hits: BLAST: pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=1e-10 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=7e-09 pir:B82357; conserved hypothetical protein VC0165 [imported] -; E=5e-08 COG: aq_1331; COG0845 Membrane-fusion protein; E=1e-11 ydhJ; COG1566 Multidrug resistance efflux pump; E=7e-06 XF0244; COG0845 Membrane-fusion protein; E=3e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.14 PF00529; HlyD family secretion protein; E=0.0021. (321 aa)
RB1685Conserved hypothetical protein; PMID: 11466286 best DB hits: BLAST: ddbj:BAA96518.1; (AB044351) ORFE [Pseudomonas syringae]; E=9e-04 pir:D82709; colicin V secretion protein XF1216 [imported] - Xylella; E=0.002 pir:B83186; probable RND efflux membrane fusion protein precursor; E=0.003 COG: XF1216; COG0845 Membrane-fusion protein; E=2e-04 PA3136; COG1566 Multidrug resistance efflux pump; E=0.003 PA4374; COG0845 Membrane-fusion protein; E=0.007 PFAM: PF00529; HlyD family secretion protein; E=0.034. (432 aa)
RB1688Conserved hypothetical protein; PMID: 7542800 best DB hits: BLAST: pir:G64100; hypothetical protein HI0894 - Haemophilus influenzae; E=0.077 swissprot:Q57500; Y894_HAEIN HYPOTHETICAL PROTEIN HI0894 -----; E=0.077 COG: HIN0311; COG0845 Membrane-fusion protein; E=0.007 PFAM: PF02163; Sterol-regulatory element bind; E=0.011 PF00364; Biotin-requiring enzyme; E=0.088. (805 aa)
RB2651Conserved hypothetical protein; PMID: 11759840 best DB hits: BLAST: pir:S77541; hypothetical protein slr1207 - Synechocystis sp. (strain; E=0.007 COG: slr1207; COG0845 Membrane-fusion protein; E=7e-04 PFAM: PF02163; Sterol-regulatory element bindi; E=0.79 PF00364; Biotin-requiring enzyme; E=0.046. (795 aa)
RB2654Similar to membrane spanning export protein; PMID: 11206551 best DB hits: BLAST: gb:AAG54840.1; AE005229_3 (AE005229) putative membrane spanning; E=0.072 gb:AAG09745.1; AF232237_3 (AF232237) membrane fusion protein; E=0.23 pir:E70342; cation efflux system (czcB-like) - Aquifex aeolicus; E=0.43 PFAM: PF00364; Biotin-requiring enzyme; E=0.0014 PF00529; HlyD family secretion protein; E=2.9e-05. (709 aa)
RB2656Best DB hits: BLAST: pir:T35248; probable oxidoreductase - Streptomyces coelicolor; E=1e-40 gb:AAK01518.1; (AF241171) putative oxidoreductase [Pseudomonas; E=0.001 swissprot:P73069; Y48L_SYNY3 YCF48-LIKE PROTEIN ----- pir:; E=0.003 PFAM: PF02012; BNR repeat; E=0.039. (359 aa)
aprFSimilar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatase; PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05. (637 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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