STRINGSTRING
RB110 RB110 RB112 RB112 RB115 RB115 RB117 RB117 RB118 RB118 RB120 RB120 RB123 RB123 RB125 RB125 RB127 RB127 RB130 RB130
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB110Iduronate-2-sulfatase; PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=3e-58 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-57 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-54 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-36 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=1e-06 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=1e-06 PFAM: PF00884; Sulfatase; E=1.7e-28. (582 aa)
RB112Hypothetical protein-transmembrane prediction. (295 aa)
RB115Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038. (308 aa)
RB117Hypothetical protein-transmembrane prediction. (129 aa)
RB118Hypothetical protein-transmembrane prediction. (169 aa)
RB120Hypothetical protein. (127 aa)
RB123Hypothetical protein-transmembrane prediction; PMID: 1738317. (430 aa)
RB125Hypothetical protein-transmembrane prediction. (297 aa)
RB127Hypothetical protein-transmembrane prediction. (350 aa)
RB130Hypothetical protein-signal peptide and transmembrane prediction. (413 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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