STRINGSTRING
RB5506 RB5506 RB5509 RB5509 RB5511 RB5511 gspK gspK RB5514 RB5514 RB5515 RB5515 RB5516 RB5516 gspG-2 gspG-2 RB5522 RB5522 RB5523 RB5523 RB5915 RB5915
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB5506Hypothetical protein. (51 aa)
RB5509Hypothetical protein. (464 aa)
RB5511Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA77335.1; (AB019494) IDN3 [Homo sapiens]; E=0.21 ddbj:BAA77349.1; (AB019602) IDN3-B [Homo sapiens]; E=0.21. (537 aa)
gspKProbable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04. (634 aa)
RB5514Hypothetical protein. (369 aa)
RB5515Hypothetical protein-signal peptide and transmembrane prediction; PMID: 12024217. (172 aa)
RB5516Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF02501; Bacterial type II secretion system p; E=0.08. (243 aa)
gspG-2PMID: 1640836 PMID: 8407845 best DB hits: BLAST: pir:B70338; general secretion pathway protein G - Aquifex aeolicus; E=0.065 swissprot:P31733; GSPG_AERHY GENERAL SECRETION PATHWAY PROTEIN G; E=0.29 pir:B82670; general secretory pathway protein G precursor XF1519; E=0.83 COG: aq_418; COG2165 General secretory pathway proteins G and H and; E=0.006. (158 aa)
RB5522Hypothetical protein. (121 aa)
RB5523Hypothetical protein. (91 aa)
RB5915Hypothetical protein. (110 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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