STRINGSTRING
RB5076 RB5076 RB5078 RB5078 RB5081 RB5081 RB5083 RB5083 RB5084 RB5084
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB5076Hypothetical protein. (113 aa)
RB5078Hypothetical protein-transmembrane prediction. (486 aa)
RB5081Probable ECF-like sigma factor SigE; PMID: 89024591 PMID: 94329558 best DB hits: BLAST: gb:AAD31513.1; AF143504_1 (AF143504) ECF-like sigma factor SigE; E=5e-07 gb:AAG01453.1; AF282857_1 (AF282857) HrpL [Pantoea stewartii; E=3e-06 gb:AAF76211.1; AF272053_1 (AF272053) HrpL [Erwinia herbicola pv; E=5e-06 COG: Rv3223c; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-06 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.5e-05. (197 aa)
RB5083Hypothetical protein-transmembrane region and signal peptide prediction. (339 aa)
RB5084PMID: 11997336 best DB hits: BLAST: gb:AAA65701.1; (U12424) mitochondrial glycerol-3-phosphate; E=0.004 pir:G02093; glycerol-3-phosphate dehydrogenase - human ----- gb:; E=0.004 gb:AAB50200.1; (U79250) glycerol-3-phosphate dehydrogenase [Homo; E=0.004 COG: AF0273; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=0.001 PFAM: PF01224; FAD-dependent glycerol-3-phospha; E=3e-05 PF01134; Glucose inhibited division prote; E=0.029 PF00070; Pyridine nucleotide-disulphide o; E=0.00038. (616 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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