STRINGSTRING
RB6413 RB6413 RB6415 RB6415 RB6416 RB6416 RB6420 RB6420 RB6423 RB6423 RB6426 RB6426
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB6413Hypothetical protein. (418 aa)
RB6415Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (91 aa)
RB6416Conserved hypothetical protein-putative SAM-dependent methyltransferases; PMID: 8905232 best DB hits: BLAST: swissprot:P75876; YCCW_ECOLI HYPOTHETICAL 41.1 KD PROTEIN IN; E=7e-47 ddbj:BAA35732.1; (D90734) Hypothetical protein [Escherichia coli]; E=7e-47 gb:AAG55453.1; AE005286_12 (AE005286) putative oxidoreductase; E=8e-47 COG: yccW; COG1092 Predicted SAM-dependent methyltransferases; E=7e-48 BH0124; COG2813 16S RNA G1207 methylase RsmC; E=1e-04 PA3048_2; COG1092 Predicted SAM-dependent methyltransferases; E=1e-04 PFAM: PF00107; Zinc-binding dehydrogenases; E=0.039 PF02005; N2,N2-dimet [...] (453 aa)
RB6420Hypothetical protein. (586 aa)
RB6423Hypothetical protein. (45 aa)
RB6426Hypothetical protein; PMID: 11259647. (442 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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