STRINGSTRING
RB12449 RB12449 RB12450 RB12450 RB12451 RB12451 RB12452 RB12452 RB12454 RB12454 RB12455 RB12455 RB12456 RB12456 RB12458 RB12458 RB12720 RB12720 RB2667 RB2667 RB2669 RB2669 RB2671 RB2671 RB2673 RB2673 RB2675 RB2675 truA truA RB2679 RB2679 RB4661 RB4661 RB4662 RB4662 RB4663 RB4663 RB6761 RB6761 RB6763 RB6763 RB6765 RB6765 RB6766 RB6766
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB12449Hypothetical protein-signal peptide and transmembrane prediction. (103 aa)
RB12450Hypothetical protein-signal peptide and transmembrane prediction. (154 aa)
RB12451Hypothetical protein-transmembrane prediction. (305 aa)
RB12452Hypothetical protein. (153 aa)
RB12454Hypothetical protein. (199 aa)
RB12455Hypothetical protein. (164 aa)
RB12456Similar to cyclophilin; PMID: 8132648 best DB hits: BLAST: pir:B53522; 20k cyclophilin - Toxoplasma gondii (fragment) -----; E=0.056. (132 aa)
RB12458Hypothetical protein. (85 aa)
RB12720Probable mannan-binding protein MBP (Lectin); PMID: 10607664 best DB hits: BLAST: gb:AAB94071.1; (AF022226) mannan-binding lectin; collectin; E=0.004 swissprot:P49259; PA2R_BOVIN 180 KD SECRETORY PHOSPHOLIPASE A2; E=0.10 gb:AAA48719.1; (J04028) proteoglycan core protein [Gallus gallus]; E=0.11 PFAM: PF00059; Lectin C-type domain; E=0.0043. (1901 aa)
RB2667Hypothetical protein-putative transmembrane protein. (236 aa)
RB2669Hypothetical protein-putative transmembrane protein. (324 aa)
RB2671Conserved hypothetical protein; PMID: 7482699 best DB hits: BLAST: ddbj:BAA91718.1; (AK001486) unnamed protein product [Homo; E=0.007 ddbj:BAB08640.1; (AB009048) gene_id:K15E6.5~unknown protein; E=0.012 pir:T00095; hypothetical protein KIAA0470 - human ----- ddbj:; E=0.052 PFAM: PF00498; FHA domain; E=1.8e-12. (337 aa)
RB2673Serine/threonine protein kinase; PMID: 1835671 best DB hits: BLAST: pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=3e-43 ddbj:BAB06223.1; (AP001515) serinethreonine protein kinase; E=7e-43 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=5e-41 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-44 PFAM: PF00069; Protein kinase domain; E=6e-61. (504 aa)
RB2675Hypothetical protein. (41 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (276 aa)
RB2679Hypothetical protein; Best DB hits: PFAM: PF01982; Domain of unknown function DUF120; E=0.28. (173 aa)
RB4661Hypothetical protein. (68 aa)
RB4662Hypothetical protein-signal peptide prediction. (37 aa)
RB4663Hypothetical protein-transmembrane prediction. (384 aa)
RB6761Conserved hypothetical protein-putative peroxiredoxin; PMID: 99209008 best DB hits: BLAST: ddbj:BAB04667.1; (AP001510) bacterioferritin comigratory protein; E=0.003 pir:S74867; hypothetical protein sll1159 - Synechocystis sp. (strain; E=0.010 pir:G81021; thioredoxin, probable NMB1958 [imported] - Neisseria; E=0.029 COG: BH0948; COG1225 Peroxiredoxins; E=3e-04 NMB1958; COG0526 Thiol-disulfide isomerase and thioredoxins; E=0.003 PFAM: PF00578; AhpC/TSA family; E=0.21. (198 aa)
RB6763Best DB hits: BLAST: pir:T13482; hypothetical protein 34F3.5 - fruit fly (Drosophila; E=0.007 swissprot:P41949; YLK1_CAEEL HYPOTHETICAL 48.2 KD PROTEIN D1044.1; E=0.060 pir:T22412; hypothetical protein F49C12.7 - Caenorhabditis elegans; E=0.18. (358 aa)
RB6765N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PMID: 8020961 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-39 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-39 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=3e-39 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=1e-33 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=8e-11 Rv0296c; COG3119 Arylsulfatase A and related enzymes; E=9e-11 PFAM: PF00884; Sulfatase; E=1.9e-44. (496 aa)
RB6766Hypothetical protein. (55 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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