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RB10175 RB10175 RB10177 RB10177 RB10178 RB10178 RB10179 RB10179 RB10180 RB10180 RB10494 RB10494 RB5722 RB5722 RB5724 RB5724 RB5727 RB5727 RB5730 RB5730 RB5731 RB5731 RB5732 RB5732 RB5733 RB5733 RB5734 RB5734 purE-2 purE-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB10175Best DB hits: BLAST: pir:E83192; hypothetical protein PA3615 [imported] - Pseudomonas; E=2e-63 embl:CAC01341.1; (AL390975) hypothetical protein [Streptomyces; E=8e-33 pir:C81216; conserved hypothetical protein NMB0283 [imported] -; E=5e-29 COG: PA3615; COG1611 Predicted Rossmann fold nucleotide-binding protein; E=2e-64. (375 aa)
RB10177Best DB hits: BLAST: pir:A72312; conserved hypothetical protein - Thermotoga maritima; E=4e-47 pir:S74581; hypothetical protein slr1411 - Synechocystis sp. (strain; E=1e-41 pir:E69014; hypothetical protein MTH1109 - Methanobacterium; E=6e-37 COG: TM0964; COG1641 Uncharacterized ACR; E=4e-48 PFAM: PF01969; Protein of unknown function DUF111; E=6.1e-89; Belongs to the LarC family. (396 aa)
RB10178Hypothetical protein. (50 aa)
RB10179Hypothetical protein-transmembrane prediction. (423 aa)
RB10180Peptidase; Best DB hits: BLAST: ddbj:BAB06575.1; (AP001516) peptidase [Bacillus halodurans]; E=1e-133 pir:T44581; thimet oligopeptidase (EC 3.4.24.15) [imported] -; E=1e-133 swissprot:O31605; PEPF_BACSU OLIGOENDOPEPTIDASE F HOMOLOG -----; E=1e-133 COG: BH2856; COG1164 Oligoendopeptidase F; E=1e-134 PFAM: PF01432; Peptidase family M3; E=2.5e-94. (602 aa)
RB10494Conserved hypothetical protein; Best DB hits: BLAST: gb:AAC15080.1; (L37087) HrmA [Nostoc sp.]; E=5e-25 pir:E72377; conserved hypothetical protein - Thermotoga maritima; E=5e-23. (436 aa)
RB5722Conserved hypothetical protein; PMID: 9371463 best DB hits: BLAST: pir:H69043; conserved hypothetical protein MTH1330 -; E=0.19 swissprot:Q50500; YE63_METTH HYPOTHETICAL PROTEIN MTH1463 (ORF11); E=0.30 pir:A55712; hypothetical protein X mtd 5'-region - Methanobacterium; E=0.39. (303 aa)
RB5724Hypothetical protein. (82 aa)
RB5727Probable oxidoreductase; Best DB hits: BLAST: gb:AAD41367.1; AF151698_4 (AF151698) putative oxidoreductase; E=9e-09 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=1e-08 pir:T38428; hypothetical oxidoreductase - fission yeast; E=5e-08 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=9.2e-22. (405 aa)
RB5730Conserved hypothetical protein-putative ATP-utilizing enzyme; PMID: 8905231 best DB hits: BLAST: swissprot:P73846; YH17_SYNY3 HYPOTHETICAL 30.2 KD PROTEIN SLR1717; E=1e-37 gb:AAB89691.1; (AE000995) conserved hypothetical protein; E=3e-28 pir:C72312; conserved hypothetical protein - Thermotoga maritima; E=7e-28 COG: slr1717; COG1606 ATP-utilizing enzymes of the PP-loop superfamily; E=1e-38 PFAM: PF00764; Arginosuccinate synthase; E=0.042. (316 aa)
RB5731Serine/threonine protein kinase; PMID: 7768349 best DB hits: BLAST: pir:T36501; probable serinethreonine protein kinase - Streptomyces; E=3e-47 swissprot:P71584; PKNB_MYCTU PUTATIVE SERINETHREONINE-PROTEIN; E=4e-46 swissprot:P54744; PKNB_MYCLE PUTATIVE SERINETHREONINE-PROTEIN; E=2e-45 COG: Rv0014c_1; COG0515 Serine/threonine protein kinases; E=4e-47 PFAM: PF00069; Protein kinase domain; E=2.8e-44. (543 aa)
RB5732Hypothetical protein. (132 aa)
RB5733Hypothetical protein. (64 aa)
RB5734Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S75932; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-35 pir:B83298; conserved hypothetical protein PA2771 [imported] -; E=7e-07 pir:S76731; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-06 COG: sll0048_1; COG2203 GAF domain; E=2e-27 PFAM: PF01590; GAF domain; E=2.5e-09. (287 aa)
purE-2Conserved hypothetical protein-putative phosphoribosylcarboxyaminoimidazole mutase (purE); PMID: 98049343 PMID: 8809759 best DB hits: BLAST: gb:AAB89969.1; (AE001016) conserved hypothetical protein; E=4e-29 pir:S76797; hypothetical protein - Synechocystis sp. (strain PCC; E=7e-28 gb:AAD29318.1; AF117208_1 (AF117208) circadian phase modifier; E=2e-24 COG: AF1275; COG1691 NCAIR mutase (PurE)-related proteins; E=4e-30. (282 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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