STRINGSTRING
RB11115 RB11115 aslA aslA RB2568 RB2568 fucA-2 fucA-2 RB683 RB683 RB684 RB684 RB686 RB686 RB691 RB691 RB693 RB693 RB695 RB695 RB701 RB701 RB7746 RB7746 RB7747 RB7747 RB7748 RB7748
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB11115Hypothetical protein. (49 aa)
aslAArylsulfatase; PMID: 7744061 best DB hits: BLAST: pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=8e-74 swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=5e-73 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=3e-65 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-74 PFAM: PF00884; Sulfatase; E=2.3e-45 PF00505; HMG (high mobility group) box; E=0.84 PF00884; Sulfatase; E=5.5e-54. (549 aa)
RB2568Best DB hits: BLAST: pir:C75206; L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus; E=3e-18 pir:E71241; L-fuculose-phosphate aldolase (EC 4.1.2.17) - Pyrococcus; E=5e-18 gb:AAK03448.1; (AE006174) unknown [Pasteurella multocida]; E=2e-16 COG: PAB0117; COG0235 Ribulose-5-phosphate 4-epimerase and related; E=2e-19 PFAM: PF00596; Class II Aldolase and Adducin N-t; E=2.4e-21. (287 aa)
fucA-2PMID: 2664711 best DB hits: BLAST: pir:E72546; L-fuculose-phosphate aldolase homolog - Aeropyrum pernix; E=6e-15 pir:C69054; L-fuculose-phosphate aldolase homolog - Methanobacterium; E=3e-14 swissprot:Q57199; YGBL_HAEIN HYPOTHETICAL PROTEIN HI1012 -----; E=9e-13 COG: APE1657; COG0235 Ribulose-5-phosphate 4-epimerase and related; E=6e-16 PFAM: PF00596; Class II Aldolase and Adducin N-t; E=8.8e-19. (430 aa)
RB683Aldehyde dehydrogenase; PMID: 7484410 best DB hits: BLAST: gb:AAF52769.1; (AE003624) CG3752 gene product [Drosophila; E=5e-73 ddbj:BAA34785.1; (AB015226) RALDH2 [Homo sapiens]; E=2e-72 swissprot:O94788; DHAS_HUMAN RETINALDEHYDE-SPECIFIC DEHYDROGENASE; E=2e-72 COG: YOR374w; COG1012 NAD-dependent aldehyde dehydrogenases; E=2e-71 PFAM: PF00171; Aldehyde dehydrogenase family; E=7e-156. (495 aa)
RB684Arylsulfatase; PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=3e-67 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=3e-66 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=1e-53 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=3e-68 HI1246; COG1368 Phosphoglycerol transferase and related proteins,; E=2e-05 PA2333; COG3119 Arylsulfatase A and related enzymes; E=4e-04 PFAM: PF00884; Sulfatase; E=1.3e-78. (653 aa)
RB686Arylsulfatase; PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=4e-51 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=8e-51 gb:AAF71377.1; AF262990_2 (AF262990) arylsulfatase [Klebsiella; E=1e-41 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-52 PFAM: PF00884; Sulfatase; E=2.2e-86. (549 aa)
RB691Hypothetical protein. (86 aa)
RB693Conserved hypothetical protein; PMID: 7542800 PMID: 11997336 best DB hits: BLAST: swissprot:P43965; YAFM_HAEIN HYPOTHETICAL PROTEIN HI0217 -----; E=0.012 COG: HI0217; COG1943 Predicted transposase; E=0.001. (260 aa)
RB695N-acetyl-galactosamine-6-sulfatase (GALNS); PMID: 20164110 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-39 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-38 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=3e-31 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=3e-30 VCA0802; COG1368 Phosphoglycerol transferase and related proteins,; E=1e-04 VNG0061C; COG3119 Arylsulfatase A and related enzymes; E=2e-04 PFAM: PF00143; Interferon alpha/beta domain; E=0.59 PF00884; Sulfatase; E=1.9e-42. (889 aa)
RB701Hypothetical protein. (49 aa)
RB7746Probable sulfatase atsD; Best DB hits: BLAST: pir:B70535; probable sulfatase (EC 3.1.6.-) atsD - Mycobacterium; E=7e-11 pir:E70533; probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium; E=4e-08 pir:B70643; probable sulfatase (EC 3.1.6.-) atsA - Mycobacterium; E=0.22 COG: Rv0663; COG3119 Arylsulfatase A and related enzymes; E=7e-12. (191 aa)
RB7747Hypothetical protein. (97 aa)
RB7748Hypothetical protein. (74 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.