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RB5964 | Probable response regulatory protein; Best DB hits: BLAST: pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-28 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=3e-26 pir:E72220; conserved hypothetical protein - Thermotoga maritima; E=1e-24 COG: aq_035_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-29 TM1699_2; COG2206 HD-GYP domain; E=1e-24 aq_563_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=2e-24 PFAM: PF01966; HD domain; E=6.6e-08 PF00989; PAS domain; E=0.032 PF00990; GGDEF domain; E=3.6e-53. (824 aa) | ||||
RB10322 | Two-component sensor histidine kinase; PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=5e-22 swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-21 pir:S70528; sensor protein pilS - Myxococcus xanthus -----gb:; E=2e-21 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=5e-23 PFAM: PF00785; PAC motif; E=0.099 PF00512; His Kinase A (phosphoacceptor) doma; E=7.9e-10 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.1e-33. (459 aa) | ||||
RB10488 | PMID: 20572072 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-67 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-64 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=8e-61 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=7e-62 PFAM: PF00785; PAC motif; E=0.00076 PF00512; His Kinase A (phosphoacceptor) d; E=1.6e-28 PF02518; Histidine kinase-, DNA gyrase B-; E=1.6e-42. (871 aa) | ||||
RB10924 | Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1739 aa) | ||||
RB11091 | Probable two-component sensor; PMID: 9045826 PMID: 10564511 best DB hits: BLAST: pir:F83324; probable two-component sensor PA2571 [imported] -; E=5e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=1e-35 pir:C82425; sensor histide kinase VCA0719 [imported] - Vibrio; E=2e-34 COG: PA2571; COG0642 Sensory transduction histidine kinases; E=5e-37 PFAM: PF00989; PAS domain; E=1.1e-06 PF00512; His Kinase A (phosphoacceptor) doma; E=0.001 PF02518; Histidine kinase-, DNA gyrase B-, p; E=2.9e-30. (769 aa) | ||||
hydH | Sensor kinase of the HydH/G two-component system; PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-23 gb:AAG09417.1; AF180147_9 (AF180147) bZIP histidine kinase TobS; E=5e-23 embl:CAB43735.1; (Y18245) bZIP histidine kinase [Pseudomonas; E=6e-23 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00072; Response regulator receiver doma; E=1.2e-21 PF00989; PAS domain; E=1e-08 PF00785; PAC motif; E=0.053. (488 aa) | ||||
cph1 | Light-regulated histidine kinase 1; PMID: 10567266 best DB hits: BLAST: pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=8e-45 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-41 embl:CAB62662.1; (AL133422) putative two-component sensor; E=2e-41 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=8e-46 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.5e-35. (582 aa) | ||||
RB11986 | Histidine protein kinase homolog GacS; PMID: 10762268 best DB hits: BLAST: gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=3e-57 pir:E83212; probable sensorresponse regulator hybrid PA3462; E=4e-56 pir:H83132; probable sensorresponse regulator hybrid PA4112; E=8e-51 COG: PA3462; COG0642 Sensory transduction histidine kinases; E=3e-57 PFAM: PF00989; PAS domain; E=3.5e-07 PF00512; His Kinase A (phosphoacceptor; E=2.5e-21 PF02518; Histidine kinase-, DNA gyrase; E=6.8e-39. (1182 aa) | ||||
RB12326 | Sensory histidine protein kinase; PMID: 11406410 best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-45 pir:F83153; probable two-component sensor PA3946 [imported] -; E=3e-36 pir:E83265; probable two-component sensor PA3044 [imported] -; E=2e-35 COG: PA3044; COG0642 Sensory transduction histidine kinases; E=2e-36 PFAM: PF01590; GAF domain; E=3.2e-20 PF00989; PAS domain; E=1.2e-07 PF00512; His Kinase A (phosphoacceptor) d; E=4.8e-16. (718 aa) | ||||
RB13112 | PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=1e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-57 pir:C82424; sensor histidine kinase LuxQ VCA0736 [imported] - Vibrio; E=8e-56 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=8e-57 PFAM: PF00785; PAC motif; E=0.34 PF00512; His Kinase A (phosphoacceptor) d; E=8.1e-23 PF02518; Histidine kinase-, DNA gyrase B-; E=3.6e-41. (697 aa) | ||||
RB13175 | PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-67 pir:S75142; sensory transduction histidine kinase slr1759 -; E=2e-55 embl:CAA65047.1; (X95731) putative sensor kinase [Synechocystis; E=3e-55 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-50 PFAM: PF00989; PAS domain; E=0.011 PF00785; PAC motif; E=0.075 PF00989; PAS domain; E=0.46. (1122 aa) | ||||
RB13181 | PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=8e-57 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=4e-49 embl:CAA37397.1; (X53315) arcB [Escherichia coli]; E=3e-48 COG: sll1353_2; COG0642 Sensory transduction histidine kinases; E=7e-43 PFAM: PF00785; PAC motif; E=0.1 PF00989; PAS domain; E=8.8e-05 PF00785; PAC motif; E=9.8e-08. (953 aa) | ||||
RB159 | PMID: 11406410 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-63 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=8e-62 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-53 PFAM: PF00989; PAS domain; E=5.9e-05 PF00512; His Kinase A (phosphoacceptor); E=4.2e-24 PF02518; Histidine kinase-, DNA gyrase B; E=4.1e-43. (993 aa) | ||||
RB1656 | Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:C83287; hypothetical protein PA2870 [imported] - Pseudomonas; E=4e-29 pir:H70302; conserved hypothetical protein aq_035 - Aquifex aeolicus; E=1e-26 pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=9e-24 COG: PA2870; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=4e-30 TM1594; COG2199 Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); E=1e-22 PA0290_2; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=1e-22 PFAM: PF00989; PAS domain; E=2.5e-05 PF00990; GGDEF domain; E=5. [...] (875 aa) | ||||
RB2008 | Signal-transducing histidine kinase; PMID: 9389475 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=4e-29 embl:CAB62662.1; (AL133422) putative two-component sensor; E=9e-24 swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=9e-22 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=3e-21 PFAM: PF00785; PAC motif; E=7.7e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=7.1e-09 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.1e-25. (452 aa) | ||||
RB2299 | Probable serine/threonine-protein kinase; PMID: 9634230 best DB hits: BLAST: pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=2e-31 gb:AAF73573.1; (AE002326) serinethreonine protein kinase; E=2e-31 pir:D83637; serinethreonine protein kinase PpkA PA0074 [imported] -; E=6e-28 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=2e-32 PFAM: PF00069; Protein kinase domain; E=5.7e-13 PF00989; PAS domain; E=3.8e-06 PF00785; PAC motif; E=0.74. (797 aa) | ||||
araC-2 | Probable transcription regulator; PMID: 3902795 best DB hits: BLAST: pir:C83489; probable transcription regulator PA1261 [imported] -; E=2e-26 pir:D69749; transcription regulator AraCXylS family homolog ybfI -; E=2e-11 pir:F82380; transcription regulator AraCXylS family VCA1074; E=4e-11 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=2e-27 BS_adaA; COG2169 Adenosine deaminase; E=3e-10 BH3842_2; COG2207 AraC-type DNA-binding domain-containing proteins; E=6e-10 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=5.4e-23. (254 aa) | ||||
RB2872 | Signal-transducing histidine kinase; PMID: 9278513 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=3e-31 swissprot:Q9LCC2; PHYA_ANASP CYANOBACTERIAL PHYTOCHROME A -----; E=3e-28 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-26 COG: slr0473_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00785; PAC motif; E=9.9e-06 PF00989; PAS domain; E=1.1e-07 PF00785; PAC motif; E=0.058. (659 aa) | ||||
RB3251 | Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S76102; hypothetical protein slr0359 - Synechocystis sp. (strain; E=3e-99 pir:S76238; hypothetical protein sll0267 - Synechocystis sp. (strain; E=2e-89 pir:S77565; hypothetical protein slr2077 - Synechocystis sp. (strain; E=5e-88 COG: PA0575_4; COG2200 Diguanylate cyclase/phosphodiesterase domain 2; E=1e-59 PFAM: PF00900; Ribosomal family S4e; E=0.72 PF00072; Response regulator receiver dom; E=3.8e-29 PF00785; PAC motif; E=0.054. (739 aa) | ||||
RB3363 | Probable transcriptional regulatory protein fixJ; PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202; sensory transduction histidine kinase sll1687 -; E=1e-09 swissprot:Q46791; YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL; E=5e-07 swissprot:P23221; FIXJ_BRAJA TRANSCRIPTIONAL REGULATORY PROTEIN; E=5e-07 COG: sll1687_1; COG2202 PAS/PAC domain; E=1e-10 ygeK; COG2771 DNA-binding HTH domains; E=4e-08 sll0779_1; COG2202 PAS/PAC domain; E=2e-07 PFAM: PF00989; PAS domain; E=0.032 PF00785; PAC motif; E=4.6e-09 PF00196; Bacterial regulatory proteins, luxR; E=1.4e-19. (474 aa) | ||||
fixL | Probable sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: gb:AAD12184.1; (U57900) utilizing regulatory protein tutC; E=4e-13 swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:; E=6e-13 ddbj:BAA89701.1; (AB030079) 145..153:the transposed position of; E=7e-13 COG: VNG1464G_1; COG2202 PAS/PAC domain; E=4e-11 BH0536; COG0642 Sensory transduction histidine kinases; E=4e-11 BS_ytvA_1; COG2202 PAS/PAC domain; E=2e-09 PFAM: PF00989; PAS domain; E=0.00031 PF00785; PAC motif; E=3e-08 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-26. (651 aa) | ||||
atoS | Sensor protein atoS; PMID: 8346225 PMID: 9278503 best DB hits: BLAST: embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=3e-20 gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=1e-19 pir:G82495; probable C4-dicarboxylate transport sensor protein; E=7e-19 COG: VCA0141; COG0642 Sensory transduction histidine kinases; E=7e-20 PFAM: PF00989; PAS domain; E=0.031 PF00785; PAC motif; E=1.5e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-12. (410 aa) | ||||
RB3779 | Putative histidine protein kinase; PMID: 10564511 best DB hits: BLAST: gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=7e-40 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=2e-38 pir:F83324; probable two-component sensor PA2571 [imported] -; E=2e-35 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=2e-39 slr1759_2; COG2202 PAS/PAC domain; E=1e-18 BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=1e-18 PFAM: PF00989; PAS domain; E=0.0067 PF00785; PAC motif; E=3.7e-09 PF00989; PAS domain; E=0.17. (1030 aa) | ||||
RB4511 | Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1637 aa) | ||||
atoS-2 | Sensor protein atoS; PMID: 8346225 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-26 gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=3e-25 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=1e-24 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00072; Response regulator receiver doma; E=2.2e-12 PF00989; PAS domain; E=1.6e-06 PF00785; PAC motif; E=0.00084. (509 aa) | ||||
RB4759 | Sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL -----pir:; E=2e-48 swissprot:P23222; FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:; E=8e-45 swissprot:P10955; FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:; E=2e-43 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=3e-27 PFAM: PF00989; PAS domain; E=1.3e-13 PF00785; PAC motif; E=0.052 PF00512; His Kinase A (phosphoacceptor) doma; E=4.1e-09. (418 aa) | ||||
RB5275 | Probable transcription regulator; PMID: 8451183 best DB hits: BLAST: pir:C83489; probable transcription regulator PA1261 [imported] -; E=1e-39 gb:AAF43900.1; (U20115) adpA-like protein [Mycobacterium; E=2e-10 pir:T43707; hypothetical protein [imported] - Streptomyces; E=2e-09 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-40 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.7e-22. (273 aa) | ||||
RB6403 | Probable response regulator; PMID: 10910347 best DB hits: BLAST: pir:T34675; probable response regulator - Streptomyces coelicolor; E=1e-05 pir:A82535; transcription regulator LuxRUhpA family XF2608; E=4e-05 pir:T35105; probable two-component regulator - Streptomyces; E=7e-05 COG: XF2608; COG2197 Response regulators consisting of a CheY-like; E=4e-06 PA3420; COG2909 ATP-dependent transcriptional regulator; E=4e-04 PA3714; COG2197 Response regulators consisting of a CheY-like; E=4e-04 PFAM: PF00989; PAS domain; E=4.2e-06 PF00196; Bacterial regulatory proteins, luxR; E=3.1e-14. (304 aa) | ||||
RB641 | Sensory histidine protein kinase; Best DB hits: BLAST: pir:G82753; two-component system, sensor protein XF0853 [imported] -; E=2e-41 gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=8e-39 pir:A82300; sensory box sensor histidine kinaseresponse regulator; E=4e-34 COG: XF0853; COG0642 Sensory transduction histidine kinases; E=2e-42 sll0779_1; COG2202 PAS/PAC domain; E=1e-23 VCA0736_1; COG0642 Sensory transduction histidine kinases; E=1e-23 PFAM: PF00785; PAC motif; E=8.5e-08 PF00989; PAS domain; E=0.013 PF00785; PAC motif; E=0.1. (1170 aa) | ||||
RB7308 | Sensory box sensor histidine kinase; PMID: 20406833 best DB hits: BLAST: pir:H83285; probable two-component sensor PA2882 [imported] -; E=2e-36 pir:F83324; probable two-component sensor PA2571 [imported] -; E=3e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=7e-34 COG: PA2882; COG0642 Sensory transduction histidine kinases; E=2e-37 PFAM: PF00785; PAC motif; E=5.1e-05 PF00512; His Kinase A (phosphoacceptor); E=0.0012 PF02518; Histidine kinase-, DNA gyrase B; E=5.2e-32. (946 aa) | ||||
RB7410 | Putative histidine kinase (PhoR1); Best DB hits: BLAST: embl:CAB37946.1; (AJ133131) putative histidine kinase (PhoR1); E=2e-43 swissprot:P35164; RESE_BACSU SENSOR PROTEIN RESE -----pir:; E=7e-40 embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=1e-38 COG: BH4026; COG0642 Sensory transduction histidine kinases; E=2e-39 PFAM: PF00989; PAS domain; E=0.0015 PF00512; His Kinase A (phosphoacceptor) doma; E=9.2e-20 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.3e-38. (445 aa) | ||||
RB7461 | Probable sensor kinase; Best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-07 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=8e-07 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-06 COG: VCA0142; COG2204 AAA superfamily ATPases with N-terminal receiver; E=7e-07 BB0570; COG0784 CheY-like receiver domains; E=6e-06 Rv0981; COG0745 Response regulators consisting of a CheY-like; E=9e-06 PFAM: PF01590; GAF domain; E=6.1e-16 PF00072; Response regulator receiver doma; E=7.9e-12. (614 aa) | ||||
rpfC | Best DB hits: BLAST: pir:S75525; sensory transduction histidine kinase sll1228 -; E=3e-62 pir:S75136; sensory transduction histidine kinase slr2104 -; E=5e-60 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=1e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=9e-60 PFAM: PF00989; PAS domain; E=0.025 PF00785; PAC motif; E=0.012 PF00989; PAS domain; E=7.5e-05. (865 aa) | ||||
RB8873 | PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-56 pir:S75525; sensory transduction histidine kinase sll1228 -; E=4e-50 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=5e-46 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-43 PFAM: PF00785; PAC motif; E=0.00017 PF00512; His Kinase A (phosphoacceptor; E=1.1e-25 PF02518; Histidine kinase-, DNA gyrase; E=8.9e-44. (801 aa) | ||||
RB9418 | Signal-transducing histidine kinase; Best DB hits: BLAST: swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=5e-32 gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=7e-28 pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=5e-25 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=5e-26 PFAM: PF00989; PAS domain; E=1.5e-06 PF00785; PAC motif; E=0.00034 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-11. (734 aa) | ||||
RB9879 | Best DB hits: BLAST: pir:C83489; probable transcription regulator PA1261 [imported] -; E=6e-26 pir:H83309; probable transcriptional regulator PA2696 [imported] -; E=8e-14 ddbj:BAB04708.1; (AP001510) transcriptional regulator (AraCXylS; E=1e-11 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=5e-27 PFAM: PF00989; PAS domain; E=0.18 PF00165; Bacterial regulatory helix-turn-heli; E=7.6e-24. (245 aa) |