STRINGSTRING
RB9017 RB9017 RB1140 RB1140 RB6403 RB6403 RB6315 RB6315 RB5736 RB5736 RB3363 RB3363 RB321 RB321 RB2743 RB2743
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB9017Best DB hits: BLAST: pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=0.001 embl:CAC01348.1; (AL390975) putative ECF-subfamily sigma factor; E=0.018 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=0.030 COG: XF2239; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.016 PF00196; Bacterial regulatory proteins,; E=0.13. (193 aa)
RB1140Response regulator; PMID: 7699720 best DB hits: BLAST: embl:CAA03999.1; (AJ000330) Styrene response regulator; E=3e-15 gb:AAC23717.1; (AF031161) transcriptional activator [Pseudomonas; E=3e-15 gb:AAG09418.1; AF180147_10 (AF180147) response regulator TobT; E=5e-15 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-15 ygeK; COG2771 DNA-binding HTH domains; E=6e-07 DR0987; COG2197 Response regulators consisting of a CheY-like; E=1e-06 PFAM: PF00072; Response regulator receiver doma; E=2.4e-10 PF00196; Bacterial regulatory proteins, l; E=6.2e-20. (211 aa)
RB6403Probable response regulator; PMID: 10910347 best DB hits: BLAST: pir:T34675; probable response regulator - Streptomyces coelicolor; E=1e-05 pir:A82535; transcription regulator LuxRUhpA family XF2608; E=4e-05 pir:T35105; probable two-component regulator - Streptomyces; E=7e-05 COG: XF2608; COG2197 Response regulators consisting of a CheY-like; E=4e-06 PA3420; COG2909 ATP-dependent transcriptional regulator; E=4e-04 PA3714; COG2197 Response regulators consisting of a CheY-like; E=4e-04 PFAM: PF00989; PAS domain; E=4.2e-06 PF00196; Bacterial regulatory proteins, luxR; E=3.1e-14. (304 aa)
RB6315Probable response-regulator; PMID: 8264528 best DB hits: BLAST: gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=5e-08 pir:S39902; nwsB protein - Bradyrhizobium japonicum -----embl:; E=5e-07 prf:2009374B; NwsB protein [Bradyrhizobium japonicum]; E=5e-07 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=1e-05 PFAM: PF01726; LexA DNA binding domain; E=0.74 PF00196; Bacterial regulatory proteins,; E=1.4e-12. (257 aa)
RB5736PMID: 1569007 best DB hits: BLAST: swissprot:P10940; UHPA_ECOLI TRANSCRIPTIONAL REGULATORY PROTEIN; E=0.020 embl:CAB37412.1; (AJ224978) TtrR [Salmonella typhimurium] -----; E=0.075 swissprot:P27667; UHPA_SALTY TRANSCRIPTIONAL REGULATORY PROTEIN; E=0.12 COG: uhpA; COG2197 Response regulators consisting of a CheY-like receiver; E=0.002. (258 aa)
RB3363Probable transcriptional regulatory protein fixJ; PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202; sensory transduction histidine kinase sll1687 -; E=1e-09 swissprot:Q46791; YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL; E=5e-07 swissprot:P23221; FIXJ_BRAJA TRANSCRIPTIONAL REGULATORY PROTEIN; E=5e-07 COG: sll1687_1; COG2202 PAS/PAC domain; E=1e-10 ygeK; COG2771 DNA-binding HTH domains; E=4e-08 sll0779_1; COG2202 PAS/PAC domain; E=2e-07 PFAM: PF00989; PAS domain; E=0.032 PF00785; PAC motif; E=4.6e-09 PF00196; Bacterial regulatory proteins, luxR; E=1.4e-19. (474 aa)
RB321Response regulator; PMID: 9741082 best DB hits: BLAST: embl:CAA05049.1; (AJ001848) TDIR [Thauera aromatica]; E=8e-28 gb:AAD12186.1; (U57900) putative DNA binding protein TutB1; E=1e-24 gb:AAK00179.1; AF222754_7 (AF222754) probable nodulation protein; E=4e-24 COG: PA4196; COG2197 Response regulators consisting of a CheY-like; E=3e-22 PA5511; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-15 uvrY; COG2197 Response regulators consisting of a CheY-like receiver; E=2e-10 PFAM: PF00072; Response regulator receiver doma; E=5.1e-23 PF00196; Bacterial regulatory proteins, l; E=5 [...] (251 aa)
RB2743Nitrate/nitrite regulatory protein narP; PMID: 8501030 best DB hits: BLAST: embl:CAA75536.1; (Y15252) nitratenitrite regulatory protein; E=3e-25 embl:CAB59507.1; (AL132648) putative two-component response; E=4e-25 pir:F83160; two-component response regulator NarL PA3879 [imported]; E=4e-25 COG: PA3879; COG2197 Response regulators consisting of a CheY-like; E=4e-26 narP; COG2197 Response regulators consisting of a CheY-like receiver; E=9e-23 DR0891; COG2197 Response regulators consisting of a CheY-like; E=1e-22 PFAM: PF00072; Response regulator receiver doma; E=7.4e-26 PF00325; Bacteria [...] (210 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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