STRINGSTRING
RB12236 RB12236 RB5057 RB5057 RB5060 RB5060 RB6958 RB6958 RB8052 RB8052
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB12236Hypothetical protein-transmembrane prediction. (203 aa)
RB5057Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:F69772; hypothetical protein ydbT - Bacillus subtilis -----; E=6e-14 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=7e-13 embl:CAA76218.1; (Y16431) hypothetical protein [Staphylococcus; E=9e-09 COG: BS_ydbS; COG3402 Uncharacterized protein; E=4e-07. (542 aa)
RB5060Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:E69772; hypothetical protein ydbS - Bacillus subtilis -----; E=7e-11 ddbj:BAB05439.1; (AP001512) BH1720~unknown conserved protein; E=6e-07 pir:T36081; probable integral membrane protein - Streptomyces; E=6e-06 COG: BS_ydbS; COG3402 Uncharacterized protein; E=7e-12. (197 aa)
RB6958Conserved hypothetical protein; PMID: 11016950 best DB hits: BLAST: gb:AAG19686.1; (AE005056) Vng1353c [Halobacterium sp. NRC-1]; E=0.009 gb:AAG19687.1; (AE005056) Vng1355h [Halobacterium sp. NRC-1]; E=0.034 ddbj:BAB05440.1; (AP001512) BH1721~unknown conserved protein; E=0.049 COG: VNG1355H; COG3402 Uncharacterized protein; E=0.003. (188 aa)
RB8052Conserved hypothetical protein; PMID: 98295987 best DB hits: BLAST: pir:G70979; hypothetical protein Rv3278c - Mycobacterium; E=0.59 PFAM: PF01944; Integral membrane protein DUF95; E=0.0077. (226 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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