STRINGSTRING
RB4527 RB4527 fabF-3 fabF-3 RB6500 RB6500 fabB fabB fabF-2 fabF-2 fabF fabF RB11975 RB11975 RB10446 RB10446
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB45273-oxoacyl-(acyl-carrier protein) synthase; PMID: 7972002 PMID: 7768872 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=9e-37 pir:S77464; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-34 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=8e-38 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=3.2e-10; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (444 aa)
fabF-33-oxoacyl-(acyl-carrier protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (429 aa)
RB6500Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...] (3665 aa)
fabBPMID: 10484179 best DB hits: BLAST: ddbj:BAB06601.1; (AP001517) 3-oxoacyl-(acyl-carrier protein); E=4e-12 pir:G69842; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=5e-11 pir:C72335; 3-oxoacyl-(acyl carrier protein) synthase II -; E=6e-10 COG: BH2882; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=4e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=0.00032 PF02801; Beta-ketoacyl synthase, C-ter; E=1.2e-08; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (464 aa)
fabF-23-oxoacyl-[acyl-carrier-protein] synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (429 aa)
fabFPMID: 8550484 best DB hits: BLAST: pir:T12022; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=1e-50 pir:G81224; 3-oxoacyl-(acyl-carrier-protein) synthase II NMB0219; E=3e-48 pir:F81995; 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); E=7e-48 COG: PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=1e-51 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=2.3e-05 PF02801; Beta-ketoacyl synthase, C-ter; E=7.8e-51; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (461 aa)
RB11975Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...] (2471 aa)
RB10446Beta keto-acyl synthase; Best DB hits: BLAST: ddbj:BAA89384.1; (AB025342) ORF10 [Moritella marina]; E=3e-37 pir:T30185; hypothetical protein 7 - Shewanella sp ----- gb:; E=3e-36 pir:T37057; probable multi-domain beta keto-acyl synthase -; E=8e-35 COG: DR1945; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=3e-17 Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-14 BH2492; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=2e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-09 PF02801; Beta-ketoacyl synthase, C-ter; E=7.6e-61 PF00109; Beta-ketoacyl syntha [...] (2941 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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