STRINGSTRING
RB1903 RB1903 RB13309 RB13309 RB12984 RB12984 RB12664 RB12664 RB12393 RB12393 mtrA mtrA RB11084 RB11084 nrfA nrfA RB9439 RB9439 nrfC nrfC RB4846 RB4846 RB3953 RB3953 RB6255 RB6255 RB6885 RB6885 RB7263 RB7263 RB6211 RB6211 RB3376 RB3376 RB7692 RB7692 mtrA-2 mtrA-2 RB2797 RB2797
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB1903Similar to NrfA-putative nitrite reduction protein; PMID: 11248100 best DB hits: BLAST: gb:AAK02107.1; (AE006035) NrfA [Pasteurella multocida]; E=0.068 PFAM: PF02335; Cytochrome c552; E=0.21; Belongs to the cytochrome c-552 family. (480 aa)
RB13309Probable c-type cytochrome precursor; PMID: 8063110 PMID: 8195067 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=5e-07 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=4e-06 swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=3e-04. (471 aa)
RB12984Hypothetical protein-transmembrane prediction. (816 aa)
RB12664Hypothetical protein-transmembrane prediction. (234 aa)
RB12393Best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.013. (668 aa)
mtrABest DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=1e-04 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.001. (407 aa)
RB11084PMID: 9384377 best DB hits: BLAST: pir:F69688; response regulator aspartate phosphatase rapC - Bacillus; E=0.79. (964 aa)
nrfACatalytic subunit of cytochrome c nitrite reductase; PMID: 20138370 best DB hits: BLAST: pir:B81280; probable periplasmic cytochrome C Cj1357c [imported] -; E=1e-50 embl:CAB53160.1; (AJ245540) catalytic subunit of cytochrome c; E=5e-42 embl:CAB37320.1; (AJ133037) cytochrome c nitrite reductase; E=5e-37 COG: Cj1357c; COG3303 Nitrite reductase, periplasmic cytochrome c subunit; E=9e-52 PFAM: PF02335; Cytochrome c552; E=0.032; Belongs to the cytochrome c-552 family. (521 aa)
RB9439Best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=6e-33 embl:CAB45032.1; (AL078635) putative large multi-functional; E=1e-32 pir:T36423; probable large, multifunctional secreted protein -; E=1e-06 PFAM: PF00034; Cytochrome c; E=0.023. (1208 aa)
nrfCSmall subunit of cytochrome c nitrite reductase; PMID: 20138370 best DB hits: BLAST: pir:C81280; probable periplasmic cytochrome C Cj1358c [imported] -; E=1e-21 embl:CAB53159.1; (AJ245540) small subunit of cytochrome c nitrite; E=1e-18 pir:A82138; cytochrome c-type protein YecK VC1951 [imported] -; E=1e-05 COG: Cj1358c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme; E=1e-22. (178 aa)
RB4846Hypothetical protein-transmembrane region and signal peptide prediction; PMID: 11932238. (692 aa)
RB3953PMID: 9923682 best DB hits: BLAST: pir:B71970; cytochrome oxidase (cbb3-type) - Helicobacter pylori; E=2e-04 pir:C64538; cytochrome-c oxidase (EC 1.9.3.1) chain fixP -; E=0.003 ddbj:BAA33529.1; (AB018105) cb-type cytochrome c oxidase subunit; E=0.009 COG: jhp0135; COG2010 Cytochrome c, mono- and diheme variants; E=2e-05 PFAM: PF00034; Cytochrome c; E=0.00073. (857 aa)
RB6255Best DB hits: BLAST: gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=4e-04 gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=4e-04 swissprot:P32707; NRFB_ECOLI CYTOCHROME C-TYPE PROTEIN NRFB; E=0.029 COG: MTH83; COG0457 TPR-repeat-containing proteins; E=0.007 PFAM: PF00515; TPR Domain; E=0.014. (778 aa)
RB6885Probable cytochrome c-554; PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=1e-05 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=1e-05. (770 aa)
RB7263Conserved hypothetical protein; PMID: 98196666 best DB hits: BLAST: pir:D70370; hypothetical protein aq_808 - Aquifex aeolicus -----; E=1e-05 PFAM: PF00430; ATP synthase B/B' CF(0); E=0.87. (689 aa)
RB6211Conserved hypothetical protein; PMID: 11474104 best DB hits: BLAST: embl:CAB53476.1; (AJ245900) CAA30373.1 protein [Oryza sativa]; E=0.023 pir:B70126; surface-located membrane protein 1 (lmp1) homolog - Lyme; E=0.091 gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.093 COG: BB0210; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.00026. (732 aa)
RB3376Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11474104. (690 aa)
RB7692Similar to c-type cytochrome precursor-putative periplasmic heme binding protein; PMID: 8063110 PMID: 8195067 PMID: 9808046 PMID: 11372197 best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.74 swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.84. (420 aa)
mtrA-2Best DB hits: BLAST: gb:AAD05531.1; (AF083240) c-type cytochrome precursor [Shewanella; E=0.024 gb:AAD05534.1; (AF083240) deca-heme c-type cytochrome [Shewanella; E=0.039. (480 aa)
RB2797Similar to cytochrome c-554 [precursor]; PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.003 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=0.003. (380 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.