STRINGSTRING
czcC czcC RB7078 RB7078 RB7603 RB7603 RB8516 RB8516 ibeB ibeB RB1120 RB1120 RB149 RB149 aprF aprF RB9308 RB9308 RB1677 RB1677 RB183 RB183 ibeB-2 ibeB-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
czcCProbable divalent cation resistant determinant protein C; PMID: 8829543 best DB hits: BLAST: gb:AAG09627.1; (AY007258) CztC [Pseudomonas fluorescens]; E=3e-15 pir:JC4698; divalent cation resistant determinant protein C -; E=4e-15 swissprot:P13509; CZCC_ALCEU COBALT-ZINC-CADMIUM RESISTANCE; E=3e-14 COG: PA2522; COG1538 Outer membrane protein; E=8e-13 PFAM: PF02321; Outer membrane efflux protein; E=2.9e-11. (478 aa)
RB7078Hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=0.52. (677 aa)
RB7603Best DB hits: BLAST: pir:T23334; hypothetical protein K04H8.3 - Caenorhabditis elegans; E=0.53 PFAM: PF02321; Outer membrane efflux protein; E=0.0021. (836 aa)
RB8516Similar to secretion protein; PMID: 10984043 best DB hits: BLAST: pir:D83024; probable secretion protein PA4974 [imported] -; E=0.28 pir:A82540; outer membrane export factor XF2586 [imported] - Xylella; E=0.31 pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=0.45 PFAM: PF02321; Outer membrane efflux protein; E=8.2e-07. (691 aa)
ibeBPMID: 10225861 best DB hits: BLAST: pir:A83347; probable outer membrane protein PA2391 [imported] -; E=1e-24 pir:F83329; probable outer membrane lipoprotein precursor PA2525; E=2e-23 gb:AAD05185.1; (AF110185) unknown [Burkholderia pseudomallei]; E=4e-23 COG: PA2391; COG1538 Outer membrane protein; E=1e-25 PFAM: PF02321; Outer membrane efflux protein; E=1.3e-18. (494 aa)
RB1120Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=1e-04 PFAM: PF02321; Outer membrane efflux protein; E=0.00035. (651 aa)
RB149Probable outer membrane channel protein; PMID: 9852029 best DB hits: BLAST: gb:AAD12177.1; (AF029405) outer membrane channel protein; E=0.001 gb:AAD30205.1; (AF094824) IbeB [Escherichia coli]; E=0.039 swissprot:Q51487; OPRM_PSEAE OUTER MEMBRANE PROTEIN OPRM PRECURSOR; E=0.049 COG: PA0427; COG1538 Outer membrane protein; E=0.005 PFAM: PF02321; Outer membrane efflux protein; E=0.0013. (672 aa)
aprFSimilar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatase; PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05. (637 aa)
RB9308Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.8e-06. (629 aa)
RB1677Hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.9e-09. (688 aa)
RB183Conserved hypothetical protein-putative outer membrane protein; PMID: 12093901 best DB hits: BLAST: gb:AAD51069.1; AF175716_1 (AF175716) immunoreactive 52kD antigen; E=0.045 pir:S75812; hypothetical protein slr1270 - Synechocystis sp. (strain; E=0.17 PFAM: PF02321; Outer membrane efflux protein; E=0.18. (594 aa)
ibeB-2Probable outer membrane lipoprotein IbeB; PMID: 99242786 best DB hits: BLAST: gb:AAD30205.1; (AF094824) IbeB [Escherichia coli]; E=3e-33 swissprot:P77211; IBEB_ECOLI PROBABLE OUTER MEMBRANE LIPOPROTEIN; E=4e-33 gb:AAG54905.1; AE005237_1 (AE005237) putative resistance protein; E=1e-32 COG: ylcB; COG1538 Outer membrane protein; E=4e-34 PFAM: PF02321; Outer membrane efflux protein; E=1.3e-09. (614 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.