STRINGSTRING
phoD-3 phoD-3 phoD phoD phoD-2 phoD-2 RB8835 RB8835 phoD-4 phoD-4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
phoD-3Alkaline phosphatase D [Precursor]; PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-124 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-110 pir:T50595; probable alkaline phosphatase [imported] - Streptomyces; E=1e-103. (527 aa)
phoDProbable alkaline phosphatase D; PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=6e-09 pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=5e-08 pir:T35097; probable secreted alkaline phosphatase - Streptomyces; E=2e-06. (471 aa)
phoD-2Probable alkaline phosphatase D [Precursor]; PMID: 8760916 best DB hits: BLAST: embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=2e-12 ddbj:BAB10478.1; (AB016888) gene_id:MDH9.6~similar to unknown; E=2e-12 embl:CAB92825.1; (AL356892) hypothetical protein [Streptomyces; E=6e-05. (470 aa)
RB8835Probable secreted alkaline phosphatase (fragment); Best DB hits: BLAST: embl:CAB99170.1; (AL390188) putative secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42. (620 aa)
phoD-4Probable alkaline phosphatase D [Precursor]; PMID: 8760916 best DB hits: BLAST: pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=6e-05 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-04 swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-04. (685 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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