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cph1 cph1 RB10924 RB10924 RB10488 RB10488 RB10322 RB10322 rpfC rpfC RB7308 RB7308 RB641 RB641 RB5275 RB5275 RB4759 RB4759 atoS-2 atoS-2 RB4511 RB4511 RB3779 RB3779 atoS atoS fixL fixL RB9418 RB9418 RB8873 RB8873 RB3363 RB3363 RB2872 RB2872 RB2008 RB2008 RB13181 RB13181 RB13175 RB13175 RB13112 RB13112 RB12326 RB12326 hydH hydH
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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cph1Light-regulated histidine kinase 1; PMID: 10567266 best DB hits: BLAST: pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=8e-45 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-41 embl:CAB62662.1; (AL133422) putative two-component sensor; E=2e-41 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=8e-46 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.5e-35. (582 aa)
RB10924Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1739 aa)
RB10488PMID: 20572072 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=3e-67 pir:E83443; probable sensorresponse regulator hybrid PA1611; E=2e-64 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=8e-61 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=7e-62 PFAM: PF00785; PAC motif; E=0.00076 PF00512; His Kinase A (phosphoacceptor) d; E=1.6e-28 PF02518; Histidine kinase-, DNA gyrase B-; E=1.6e-42. (871 aa)
RB10322Two-component sensor histidine kinase; PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=5e-22 swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-21 pir:S70528; sensor protein pilS - Myxococcus xanthus -----gb:; E=2e-21 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=5e-23 PFAM: PF00785; PAC motif; E=0.099 PF00512; His Kinase A (phosphoacceptor) doma; E=7.9e-10 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.1e-33. (459 aa)
rpfCBest DB hits: BLAST: pir:S75525; sensory transduction histidine kinase sll1228 -; E=3e-62 pir:S75136; sensory transduction histidine kinase slr2104 -; E=5e-60 pir:H82211; sensory box sensor histidine kinaseresponse regulator; E=1e-58 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=9e-60 PFAM: PF00989; PAS domain; E=0.025 PF00785; PAC motif; E=0.012 PF00989; PAS domain; E=7.5e-05. (865 aa)
RB7308Sensory box sensor histidine kinase; PMID: 20406833 best DB hits: BLAST: pir:H83285; probable two-component sensor PA2882 [imported] -; E=2e-36 pir:F83324; probable two-component sensor PA2571 [imported] -; E=3e-36 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=7e-34 COG: PA2882; COG0642 Sensory transduction histidine kinases; E=2e-37 PFAM: PF00785; PAC motif; E=5.1e-05 PF00512; His Kinase A (phosphoacceptor); E=0.0012 PF02518; Histidine kinase-, DNA gyrase B; E=5.2e-32. (946 aa)
RB641Sensory histidine protein kinase; Best DB hits: BLAST: pir:G82753; two-component system, sensor protein XF0853 [imported] -; E=2e-41 gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=8e-39 pir:A82300; sensory box sensor histidine kinaseresponse regulator; E=4e-34 COG: XF0853; COG0642 Sensory transduction histidine kinases; E=2e-42 sll0779_1; COG2202 PAS/PAC domain; E=1e-23 VCA0736_1; COG0642 Sensory transduction histidine kinases; E=1e-23 PFAM: PF00785; PAC motif; E=8.5e-08 PF00989; PAS domain; E=0.013 PF00785; PAC motif; E=0.1. (1170 aa)
RB5275Probable transcription regulator; PMID: 8451183 best DB hits: BLAST: pir:C83489; probable transcription regulator PA1261 [imported] -; E=1e-39 gb:AAF43900.1; (U20115) adpA-like protein [Mycobacterium; E=2e-10 pir:T43707; hypothetical protein [imported] - Streptomyces; E=2e-09 COG: PA1261; COG2207 AraC-type DNA-binding domain-containing proteins; E=1e-40 PFAM: PF00165; Bacterial regulatory helix-turn-heli; E=2.7e-22. (273 aa)
RB4759Sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL -----pir:; E=2e-48 swissprot:P23222; FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:; E=8e-45 swissprot:P10955; FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:; E=2e-43 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=3e-27 PFAM: PF00989; PAS domain; E=1.3e-13 PF00785; PAC motif; E=0.052 PF00512; His Kinase A (phosphoacceptor) doma; E=4.1e-09. (418 aa)
atoS-2Sensor protein atoS; PMID: 8346225 best DB hits: BLAST: swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-26 gb:AAF33505.1; (AF170176) Salmonella typhimurium sensor protein; E=3e-25 gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=1e-24 COG: atoS_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00072; Response regulator receiver doma; E=2.2e-12 PF00989; PAS domain; E=1.6e-06 PF00785; PAC motif; E=0.00084. (509 aa)
RB4511Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1637 aa)
RB3779Putative histidine protein kinase; PMID: 10564511 best DB hits: BLAST: gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=7e-40 pir:D82244; sensory box sensor histidine kinase VC1084 [imported] -; E=2e-38 pir:F83324; probable two-component sensor PA2571 [imported] -; E=2e-35 COG: VC1084; COG0642 Sensory transduction histidine kinases; E=2e-39 slr1759_2; COG2202 PAS/PAC domain; E=1e-18 BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=1e-18 PFAM: PF00989; PAS domain; E=0.0067 PF00785; PAC motif; E=3.7e-09 PF00989; PAS domain; E=0.17. (1030 aa)
atoSSensor protein atoS; PMID: 8346225 PMID: 9278503 best DB hits: BLAST: embl:CAB64771.1; (AJ007794) kin1 [Bacillus cereus] -----; E=3e-20 gb:AAD47812.1; (AF163841) putative histidine protein kinase; E=1e-19 pir:G82495; probable C4-dicarboxylate transport sensor protein; E=7e-19 COG: VCA0141; COG0642 Sensory transduction histidine kinases; E=7e-20 PFAM: PF00989; PAS domain; E=0.031 PF00785; PAC motif; E=1.5e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-12. (410 aa)
fixLProbable sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: gb:AAD12184.1; (U57900) utilizing regulatory protein tutC; E=4e-13 swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL ----- pir:; E=6e-13 ddbj:BAA89701.1; (AB030079) 145..153:the transposed position of; E=7e-13 COG: VNG1464G_1; COG2202 PAS/PAC domain; E=4e-11 BH0536; COG0642 Sensory transduction histidine kinases; E=4e-11 BS_ytvA_1; COG2202 PAS/PAC domain; E=2e-09 PFAM: PF00989; PAS domain; E=0.00031 PF00785; PAC motif; E=3e-08 PF02518; Histidine kinase-, DNA gyrase B-; E=8e-26. (651 aa)
RB9418Signal-transducing histidine kinase; Best DB hits: BLAST: swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=5e-32 gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=7e-28 pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=5e-25 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=5e-26 PFAM: PF00989; PAS domain; E=1.5e-06 PF00785; PAC motif; E=0.00034 PF00512; His Kinase A (phosphoacceptor) doma; E=1.3e-11. (734 aa)
RB8873PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-56 pir:S75525; sensory transduction histidine kinase sll1228 -; E=4e-50 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=5e-46 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=2e-43 PFAM: PF00785; PAC motif; E=0.00017 PF00512; His Kinase A (phosphoacceptor; E=1.1e-25 PF02518; Histidine kinase-, DNA gyrase; E=8.9e-44. (801 aa)
RB3363Probable transcriptional regulatory protein fixJ; PMID: 2000090 PMID: 8552028 best DB hits: BLAST: pir:S77202; sensory transduction histidine kinase sll1687 -; E=1e-09 swissprot:Q46791; YGEK_ECOLI HYPOTHETICAL TRANSCRIPTIONAL; E=5e-07 swissprot:P23221; FIXJ_BRAJA TRANSCRIPTIONAL REGULATORY PROTEIN; E=5e-07 COG: sll1687_1; COG2202 PAS/PAC domain; E=1e-10 ygeK; COG2771 DNA-binding HTH domains; E=4e-08 sll0779_1; COG2202 PAS/PAC domain; E=2e-07 PFAM: PF00989; PAS domain; E=0.032 PF00785; PAC motif; E=4.6e-09 PF00196; Bacterial regulatory proteins, luxR; E=1.4e-19. (474 aa)
RB2872Signal-transducing histidine kinase; PMID: 9278513 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=3e-31 swissprot:Q9LCC2; PHYA_ANASP CYANOBACTERIAL PHYTOCHROME A -----; E=3e-28 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-26 COG: slr0473_3; COG0642 Sensory transduction histidine kinases; E=1e-27 PFAM: PF00785; PAC motif; E=9.9e-06 PF00989; PAS domain; E=1.1e-07 PF00785; PAC motif; E=0.058. (659 aa)
RB2008Signal-transducing histidine kinase; PMID: 9389475 best DB hits: BLAST: gb:AAB89763.1; (AE001000) signal-transducing histidine kinase; E=4e-29 embl:CAB62662.1; (AL133422) putative two-component sensor; E=9e-24 swissprot:Q9R6X3; PHYB_ANASP CYANOBACTERIAL PHYTOCHROME B -----; E=9e-22 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=3e-21 PFAM: PF00785; PAC motif; E=7.7e-10 PF00512; His Kinase A (phosphoacceptor) doma; E=7.1e-09 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.1e-25. (452 aa)
RB13181PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=8e-57 pir:E82198; sensor histidine kinaseresponse regulator VC1445; E=4e-49 embl:CAA37397.1; (X53315) arcB [Escherichia coli]; E=3e-48 COG: sll1353_2; COG0642 Sensory transduction histidine kinases; E=7e-43 PFAM: PF00785; PAC motif; E=0.1 PF00989; PAS domain; E=8.8e-05 PF00785; PAC motif; E=9.8e-08. (953 aa)
RB13175PMID: 2201868 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=2e-67 pir:S75142; sensory transduction histidine kinase slr1759 -; E=2e-55 embl:CAA65047.1; (X95731) putative sensor kinase [Synechocystis; E=3e-55 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=1e-50 PFAM: PF00989; PAS domain; E=0.011 PF00785; PAC motif; E=0.075 PF00989; PAS domain; E=0.46. (1122 aa)
RB13112PMID: 7984107 best DB hits: BLAST: pir:S75136; sensory transduction histidine kinase slr2104 -; E=1e-69 pir:S75130; sensory transduction histidine kinase slr2098 -; E=4e-57 pir:C82424; sensor histidine kinase LuxQ VCA0736 [imported] - Vibrio; E=8e-56 COG: VC1349_2; COG0642 Sensory transduction histidine kinases; E=8e-57 PFAM: PF00785; PAC motif; E=0.34 PF00512; His Kinase A (phosphoacceptor) d; E=8.1e-23 PF02518; Histidine kinase-, DNA gyrase B-; E=3.6e-41. (697 aa)
RB12326Sensory histidine protein kinase; PMID: 11406410 best DB hits: BLAST: gb:AAA98756.1; (L29642) sensor kinase [Pseudomonas fluorescens]; E=2e-45 pir:F83153; probable two-component sensor PA3946 [imported] -; E=3e-36 pir:E83265; probable two-component sensor PA3044 [imported] -; E=2e-35 COG: PA3044; COG0642 Sensory transduction histidine kinases; E=2e-36 PFAM: PF01590; GAF domain; E=3.2e-20 PF00989; PAS domain; E=1.2e-07 PF00512; His Kinase A (phosphoacceptor) d; E=4.8e-16. (718 aa)
hydHSensor kinase of the HydH/G two-component system; PMID: 2666400 PMID: 11243806 best DB hits: BLAST: gb:AAG59806.1; AF305914_1 (AF305914) HydH [Klebsiella oxytoca]; E=2e-23 gb:AAG09417.1; AF180147_9 (AF180147) bZIP histidine kinase TobS; E=5e-23 embl:CAB43735.1; (Y18245) bZIP histidine kinase [Pseudomonas; E=6e-23 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=2e-22 PFAM: PF00072; Response regulator receiver doma; E=1.2e-21 PF00989; PAS domain; E=1e-08 PF00785; PAC motif; E=0.053. (488 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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