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RB10616 RB10616 ilvD ilvD xylB xylB ilvD-3 ilvD-3 rpe rpe sgbU sgbU ugdH ugdH xylA xylA RB3924 RB3924 RB4129 RB4129 RB5316 RB5316 RB5320 RB5320 RB5406 RB5406 adh-3 adh-3 RB6095 RB6095 RB8266 RB8266 araB araB dapA-4 dapA-4 hpaG hpaG RB8941 RB8941 hasC hasC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RB10616Altronate hydrolase; PMID: 9278503 PMID: 3038546 best DB hits: BLAST: ddbj:BAB04209.1; (AP001508) altronate hydrolase [Bacillus; E=6e-65 gb:AAG58224.1; AE005539_1 (AE005539) altronate hydrolase; E=2e-64 swissprot:P42604; UXAA_ECOLI ALTRONATE HYDROLASE (ALTRONIC ACID; E=2e-63 COG: BH0490; COG2721 Altronate dehydratase; E=6e-66. (634 aa)
ilvDDihydroxy-acid dehydratase; PMID: 8325851 PMID: 7771772 best DB hits: BLAST: swissprot:P77596; YAGF_ECOLI HYPOTHETICAL 69.4 KD PROTEIN IN; E=0.0 swissprot:P39358; YJHG_ECOLI HYPOTHETICAL 70.0 KD PROTEIN IN; E=0.0 pir:S56522; hypothetical protein f655 - Escherichia coli -----; E=0.0 COG: yagF; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; E=0.0 MJ1276; COG0129 Dihydroxyacid dehydratase/phosphogluconate; E=5e-48 ilvD; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; E=2e-34 PFAM: PF00920; Dehydratase family; E=3.6e-208; Belongs to the IlvD/Edd family. (671 aa)
xylBXylulose kinase; PMID: 9495747 best DB hits: BLAST: gb:AAC46146.1; (AF001974) xylulose kinase; XylB; E=1e-108 swissprot:P39211; XYLB_BACSU XYLULOSE KINASE (XYLULOKINASE); E=4e-79 ddbj:BAB06475.1; (AP001516) xylose kinase [Bacillus halodurans]; E=5e-76 COG: BS_xylB; COG1070 Sugar (pentulose and hexulose) kinases; E=4e-80 PAB2406; COG0554 Glycerol kinase; E=2e-31 APE0017; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-27 PFAM: PF00370; FGGY family of carbohydrate kinas; E=6e-96 PF02782; FGGY family of carbohydrate kinas; E=7.6e-63. (509 aa)
ilvD-3Dihydroxy-acid dehydratase; PMID: 8688087 best DB hits: BLAST: pir:T36902; probable dihydroxy-acid dehydratase - Streptomyces; E=1e-172 embl:CAB61588.1; (AL133210) putative dihydroxy-acid dehydratase; E=1e-132 swissprot:Q58672; ILVD_METJA DIHYDROXY-ACID DEHYDRATASE (DAD); E=4e-79 COG: MJ1276; COG0129 Dihydroxyacid dehydratase/phosphogluconate; E=4e-80 ilvD; COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; E=1e-51 XF0099; COG0129 Dihydroxyacid dehydratase/phosphogluconate; E=1e-50 PFAM: PF00920; Dehydratase family; E=1.2e-108; Belongs to the IlvD/Edd family. (577 aa)
rpeRibulose-phosphate 3-epimerase; PMID: 10625676 best DB hits: BLAST: pir:G82052; ribulose-phosphate 3-epimerase VC2625 [imported] -; E=1e-42 gb:AAK03703.1; (AE006199) Dod [Pasteurella multocida]; E=1e-40 gb:AAF01048.1; AF189365_1 (AF189365) D-ribulose-5-phosphate; E=3e-40 COG: VC2625; COG0036 Pentose-5-phosphate-3-epimerase; E=1e-43 PFAM: PF00834; Ribulose-phosphate 3 epimerase; E=1.8e-85. (235 aa)
sgbUProbable hexulose-6-phosphate isomerase; PMID: 8041620 best DB hits: BLAST: pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=8e-07 swissprot:P37679; SGBU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=8e-07 swissprot:P39305; SGAU_ECOLI PUTATIVE HEXULOSE-6-PHOSPHATE; E=1e-05 COG: sgbU; COG1082 Predicted endonucleases; E=7e-08 PFAM: PF01319; Cholesterol oxidase; E=0.042. (350 aa)
ugdHUDP-glucose 6-dehydrogenase; PMID: 8938413 best DB hits: BLAST: pir:T51527; UDP-glucose dehydrogenase-like protein - Arabidopsis; E=1e-155 ddbj:BAB02581.1; (AP001309) UDP-glucose dehydrogenase; E=1e-151 swissprot:Q96558; UGDH_SOYBN UDP-GLUCOSE 6-DEHYDROGENASE (UDP-GLC; E=1e-150 COG: aq_024; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=2e-61 VC0918; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; E=1e-27 PA3540; COG1004 Predicted UDP-glucose 6-dehydrogenase; E=8e-26 PFAM: PF00984; UDP-glucose/GDP-mannose dehydro; E=2.6e-180; Belongs to the UDP-glucose/GDP-mannose dehydrogena [...] (477 aa)
xylAXylose isomerase; PMID: 1368665 PMID: 9495747 best DB hits: BLAST: swissprot:P22842; XYLA_THEET XYLOSE ISOMERASE ----- pir:; E=1e-155 gb:AAC46145.1; (AF001974) xylose isomerase; XylA; E=1e-155 swissprot:P19148; XYLA_THETU XYLOSE ISOMERASE ----- pir:; E=1e-153 COG: BH2757; COG2115 Xylose isomerase; E=1e-149 PFAM: PF00259; Xylose isomerase; E=1.5e-221. (454 aa)
RB3924Conserved hypothetical protein; PMID: 9639930 best DB hits: BLAST: swissprot:P46218; Y31K_SULAC HYPOTHETICAL 31.5 KD PROTEIN -----; E=6e-06 swissprot:O34940; YVRE_BACSU HYPOTHETICAL 33.2 KD PROTEIN IN; E=7e-05 ddbj:BAA13046.1; (D86217) regucalcin [Mus musculus]; E=0.76 COG: BS_yvrE; COG3386 Uncharacterized protein; E=7e-06. (323 aa)
RB4129Conserved hypothetical protein; PMID: 99287316 best DB hits: BLAST: pir:C72377; hypothetical protein TM0440 - Thermotoga maritima; E=1e-22. (426 aa)
RB5316Pectate lyase; PMID: 8955401 PMID: 1983191 best DB hits: BLAST: pir:JC6502; pectate lyase (EC 4.2.2.2) - Amycolata sp -----gb:; E=6e-30 pir:D72376; pectate lyase - Thermotoga maritima (strain MSB8); E=1e-26 ddbj:BAA96477.1; (AB041769) pectate lyase Pel-4A [Bacillus sp; E=3e-25 PFAM: PF00544; Pectate lyase; E=8.6e-31. (353 aa)
RB5320Probable zinc-type alcohol dehydrogenase; PMID: 3622514 best DB hits: BLAST: ddbj:BAA75341.1; (AB011837) sorbitol dehydrogenase [Bacillus; E=8e-44 swissprot:P77539; YDJL_ECOLI HYPOTHETICAL ZINC-TYPE ALCOHOL; E=7e-35 gb:AAG56765.1; AE005400_10 (AE005400) putative oxidoreductase; E=9e-35 COG: BH0189; COG1063 Threonine dehydrogenase and related Zn-dependent; E=7e-45 PFAM: PF00107; Zinc-binding dehydrogenases; E=6.5e-60. (396 aa)
RB5406Carbohydrate kinase, FGGY family; PMID: 1659648 best DB hits: BLAST: gb:AAF01486.1; AF137263_5 (AF137263) L-fuculose kinase; E=1e-84 ddbj:BAB05270.1; (AP001512) rhamnulokinase [Bacillus halodurans]; E=3e-79 pir:E70014; rhamnulokinase (EC 2.7.1.5) yulC - Bacillus subtilis; E=8e-75 COG: BH1551; COG1070 Sugar (pentulose and hexulose) kinases; E=2e-80 VNG1967G; COG0554 Glycerol kinase; E=2e-04 BH2676; COG1070 Sugar (pentulose and hexulose) kinases; E=0.004 PFAM: PF00370; FGGY family of carbohydrate kin; E=7.3e-12 PF02782; FGGY family of carbohydrate kin; E=0.11. (561 aa)
adh-3Probable alcohol dehydrogenase (Zn-dependent); PMID: 3622514 best DB hits: BLAST: prf:2104227E; 2,3-butanediol dehydrogenase [Pseudomonas putida]; E=3e-40 pir:C83128; 2,3-butanediol dehydrogenase PA4153 [imported] -; E=4e-40 ddbj:BAB03906.1; (AP001507) sorbitol dehydrogenase [Bacillus; E=1e-38 COG: PA4153; COG1063 Threonine dehydrogenase and related Zn-dependent; E=4e-41 Rv3086; COG1062 Zn-dependent alcohol dehydrogenases, class III; E=7e-26 PFAM: PF00107; Zinc-binding dehydrogenases; E=4.4e-92. (346 aa)
RB6095Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04212.1; (AP001508) BH0493~unknown [Bacillus halodurans]; E=4e-12 gb:AAF77061.1; AF266466_3 (AF266466) putative hexuronic acid; E=0.003 gb:AAK05726.1; AE006393_5 (AE006393) glucuronate isomerase (EC; E=0.57. (655 aa)
RB8266Conserved hypothetical protein; Best DB hits: BLAST: gb:AAK03329.1; (AE006164) unknown [Pasteurella multocida]; E=1e-04 swissprot:Q58707; YD11_METJA HYPOTHETICAL PROTEIN MJ1311 -----; E=2e-04 pir:S47803; hypothetical 33.7K protein (avtA-selB intergenic region); E=0.002 COG: MJ1311; COG1082 Predicted endonucleases; E=2e-05. (349 aa)
araBL-ribulokinase; PMID: 9084180 best DB hits: BLAST: swissprot:P94524; ARAB_BACSU L-RIBULOKINASE ----- pir: D69587; E=3e-97 gb:AAD45717.1; AF160811_5 (AF160811) L-ribulokinase [Bacillus; E=3e-96 embl:CAA61586.1; (X89408) L-ribulokinase [Bacillus subtilis]; E=6e-96 COG: BS_araB; COG1069 Ribulose kinase; E=3e-98 TM0284; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-14 TM1430; COG0554 Glycerol kinase; E=7e-06 PFAM: PF00370; FGGY family of carbohydrate kinas; E=7.8e-06 PF01869; BadF/BadG/BcrA/BcrD ATPase family; E=0.0012 PF02782; FGGY family of carbohydrate kinas; E=1.4e-16; Belongs t [...] (564 aa)
dapA-4Dihydrodipicolinate synthase DapA; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate. Belongs to the DapA family. (319 aa)
hpaGProbable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; PMID: 8550403 best DB hits: BLAST: embl:CAC24092.1; (AL512982) hypothetical [Sulfolobus; E=1e-48 embl:CAB55723.1; (AL117387) hypothetical protein SCF41.20c; E=3e-18 pir:T45421; probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; E=1e-10 COG: Rv2993c; COG0179 2-keto-4-pentenoate; E=2e-11 PFAM: PF01557; Fumarylacetoacetate (FAA) hydro; E=0.0074. (287 aa)
RB8941Ketoglutarate semialdehyde dehydrogenase; PMID: 96118391 PMID: 20363527 best DB hits: BLAST: pir:S27619; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=2e-65 pir:S27612; ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.-) -; E=6e-61 pdb:1EYY; A Chain A, Crystal Structure Of The Nadp+ Dependent; E=5e-54 COG: PA2217; COG1012 NAD-dependent aldehyde dehydrogenases; E=4e-54 PFAM: PF00171; Aldehyde dehydrogenase family; E=3.5e-08. (555 aa)
hasCPMID: 7499387 best DB hits: BLAST: pir:A75096; UTP--glucose-1-phosphate uridylyltransferase (EC; E=3e-20 gb:AAD32398.1; AAD32398 (AF065404) pXO1-94 [Bacillus anthracis]; E=4e-19 swissprot:Q54713; HASC_STRPY UTP--GLUCOSE-1-PHOSPHATE; E=2e-17 COG: PAB0771; COG1210 UDP-glucose pyrophosphorylase; E=3e-21 PAB0784; COG1209 dTDP-glucose pyrophosphorylase; E=3e-04 PFAM: PF00483; Nucleotidyl transferase; E=0.014. (310 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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