STRINGSTRING
RB10246 RB10246 csrA csrA RB10308 RB10308 RB10322 RB10322 glnB glnB RB10924 RB10924 ntrC ntrC dnaA dnaA RB11604 RB11604 RB11706 RB11706 RB11879 RB11879 RB11934 RB11934 RB12108 RB12108 degP degP RB12949 RB12949 RB12952 RB12952 RB1329 RB1329 RB1359 RB1359 dnaA-2 dnaA-2 degP-2 degP-2 RB2621 RB2621 glnD glnD glnB-2 glnB-2 RB307 RB307 atoC-5 atoC-5 fliC fliC FliC FliC ntrC-3 ntrC-3 RB4511 RB4511 RB4759 RB4759 RB4994 RB4994 RB5256 RB5256 RB5465 RB5465 phoA phoA phoD phoD RB5943 RB5943 RB6350 RB6350 RB6353 RB6353 RB6469 RB6469 natB natB RB6491 RB6491 fliC-2 fliC-2 sphX sphX glnII glnII RB7410 RB7410 hydH-3 hydH-3 RB754 RB754 natA natA natB-2 natB-2 RB7911 RB7911 csrA-3 csrA-3 whiG whiG phoD-2 phoD-2 RB8835 RB8835 phoD-3 phoD-3 wecB wecB phoD-4 phoD-4 pomA pomA htrA-3 htrA-3 glnB-4 glnB-4 cydA cydA cydB cydB
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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gene neighborhood
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RB10246Conserved hypothetical protein; PMID: 9651254 PMID: 10215859 PMID: 10848995 PMID: 11073907 best DB hits: BLAST: gb:AAG32953.1; (AF032114) unknown [Methylobacterium extorquens]; E=2e-21 pir:D69199; conserved hypothetical protein MTH743 - Methanobacterium; E=6e-18 swissprot:Q57680; Y227_METJA HYPOTHETICAL PROTEIN MJ0227 -----; E=2e-16 COG: MTH743; COG1767 Uncharacterized ACR; E=5e-19 PFAM: PF01874; CitG family; E=1.9e-07. (316 aa)
csrAProbable CsrA_thema carbon storage regulator homolog; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (81 aa)
RB10308Probable response regulatory protein; PMID: 9823893 PMID: 10984043 best DB hits: BLAST: pir:A71678; probable response regulatory protein RP237 - Rickettsia; E=2e-21 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=6e-21 pir:E83183; probable two-component response regulator PA3702; E=1e-20 COG: VCA0697_3; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=6e-22 PFAM: PF00072; Response regulator receiver doma; E=5.4e-17 PF00990; GGDEF domain; E=7.2e-44. (308 aa)
RB10322Two-component sensor histidine kinase; PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB05639.1; (AP001513) two-component sensor histidine kinase; E=5e-22 swissprot:Q06067; ATOS_ECOLI SENSOR PROTEIN ATOS ----- pir:; E=1e-21 pir:S70528; sensor protein pilS - Myxococcus xanthus -----gb:; E=2e-21 COG: BH1920; COG0642 Sensory transduction histidine kinases; E=5e-23 PFAM: PF00785; PAC motif; E=0.099 PF00512; His Kinase A (phosphoacceptor) doma; E=7.9e-10 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.1e-33. (459 aa)
glnBNitrogen regulatory protein P-II; PMID: 2574599 best DB hits: BLAST: swissprot:Q52905; GLNB_RHIME NITROGEN REGULATORY PROTEIN P-II; E=3e-18 gb:AAD56036.1; AF182395_2 (AF182395) P-II regulatory protein; E=1e-17 swissprot:P21193; GLNB_AZOBR NITROGEN REGULATORY PROTEIN P-II; E=1e-17 COG: NMB1995; COG0347 Nitrogen regulatory protein PII; E=7e-18 PFAM: PF00543; Nitrogen regulatory protein P-II; E=5.6e-25. (105 aa)
RB10924Probable sensor/response regulator hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1739 aa)
ntrCNitrogen regulation protein NR(I); PMID: 7602583 PMID: 7827089 PMID: 10512705 PMID: 10622255 best DB hits: BLAST: pir:E83006; two-component response regulator NtrC PA5125 [imported]; E=9e-89 swissprot:P41789; NTRC_SALTY NITROGEN REGULATION PROTEIN NR(I); E=1e-85 gb:AAG59057.1; AE005617_6 (AE005617) response regulator for gln; E=2e-85 COG: PA5125; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-90 PFAM: PF00072; Response regulator receiver doma; E=1e-31 PF00158; Sigma-54 interaction domain; E=2.1e-114. (470 aa)
dnaAChromosomal replication initiator protein dnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (420 aa)
RB11604Sensory transduction histidine kinase; PMID: 11406410 PMID: 1574005 best DB hits: BLAST: pir:E83529; sensorresponse regulator hybrid PA0928 [imported] -; E=6e-47 pir:B82427; sensor protein TorS VCA0709 [imported] - Vibrio cholerae; E=1e-45 gb:AAF04854.1; AF197912_1 (AF197912) histidine protein kinase; E=8e-44 COG: PA0928; COG0642 Sensory transduction histidine kinases; E=6e-48 PFAM: PF00672; HAMP domain; E=3.8e-12 PF00512; His Kinase A (phosphoacceptor); E=2.4e-25 PF02518; Histidine kinase-, DNA gyrase; E=6.4e-40. (652 aa)
RB11706Periplasmic serine proteinase Do; PMID: 3057437 best DB hits: BLAST: pir:F72359; periplasmic serine proteinase Do (EC 3.4.21.-) -; E=9e-41 pir:F81329; serine proteinase (proteinase DO) (EC 3.4.21.-) Cj1228c; E=2e-40 embl:CAA57948.1; (X82628) serine protease [Campylobacter jejuni]; E=2e-40 COG: TM0571; COG0265 Trypsin-like serine proteases, typically; E=8e-42 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 PA0766; COG0265 Trypsin-like serine proteases, typically; E=5e-40 PFAM: PF00089; Trypsin; E=3.8e-20 PF00595; PDZ domain (Also known as DHR or GLG; E=4.9e-06. (508 aa)
RB11879Probable periplasmic serine proteinase; PMID: 3057437 PMID: 10761919 best DB hits: BLAST: pir:B81914; probable periplasmic serine proteinase (EC 3.4.21.-); E=2e-47 gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv; E=8e-47 pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=1e-46 COG: NMB0532; COG0265 Trypsin-like serine proteases, typically; E=6e-48 RP124; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=7e-45 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=3e-44 PFAM: PF00089; Trypsin; E=1.9e-16 PF00595; PDZ domain (Also known as DHR [...] (458 aa)
RB11934Uncharacterized protein; PMID: 8905231 best DB hits: BLAST: pir:S75621; hypothetical protein sll1898 - Synechocystis sp. (strain; E=7e-06 pir:D70314; heme O oxygenase - Aquifex aeolicus ----- gb:; E=0.14 COG: sll1898; COG1612 Uncharacterized protein required for cytochrome; E=7e-07 PFAM: PF02628; Cytochrome oxidase assembly protei; E=0.0068. (356 aa)
RB12108Probable response regulatory protein (atoC); PMID: 9665876 PMID: 8346225 best DB hits: BLAST: ddbj:BAB06667.1; (AP001517) two-component response regulator in; E=2e-87 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-85 gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=5e-83 COG: BH2948; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-88 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-66 CT468; COG2204 AAA superfamily ATPases with N-terminal receiver; E=5e-66 PFAM: PF00072; Response regulator receiver doma; [...] (485 aa)
degPSerine proteinase; PMID: 2180903 best DB hits: BLAST: pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=1e-50 swissprot:Q44597; DEGP_BRUAB PROBABLE SERINE PROTEASE DO-LIKE; E=9e-47 gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv; E=2e-46 COG: PA0766; COG0265 Trypsin-like serine proteases, typically; E=1e-51 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=9e-44 aq_1450; COG0265 Trypsin-like serine proteases, typically; E=2e-43 PFAM: PF00089; Trypsin; E=1.8e-14 PF00595; PDZ domain (Also known as DHR or GLG; E=1.4e-10. (509 aa)
RB12949Histidine protein kinase; PMID: 8757734 best DB hits: BLAST: gb:AAB38420.1; (L39938) histidine protein kinase [Sinorhizobium; E=2e-16 pir:E83083; probable two-component sensor PA4494 [imported] -; E=3e-16 gb:AAA93222.1; (U22925) RegB [Rhodobacter sphaeroides]; E=2e-12 COG: PA4494; COG0642 Sensory transduction histidine kinases; E=2e-17 PFAM: PF00512; His Kinase A (phosphoacceptor; E=0.011 PF02518; Histidine kinase-, DNA gyrase; E=1.2e-28. (470 aa)
RB12952Two-component system, regulatory protein; PMID: 7699720 best DB hits: BLAST: pir:D83083; probable two-component response regulator PA4493; E=8e-30 gb:AAF87208.1; AF228577_2 (AF228577) ActR [Rhizobium leguminosarum; E=8e-30 swissprot:Q52913; ACTR_RHIME ACID TOLERANCE REGULATORY PROTEIN; E=1e-29 COG: PA4493; COG0784 CheY-like receiver domains; E=8e-31 TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=3e-12 BH3787; COG0784 CheY-like receiver domains; E=8e-11 PFAM: PF00072; Response regulator receiver doma; E=2.9e-25. (221 aa)
RB1329Probable polysaccharide export protein; PMID: 8759852 best DB hits: BLAST: gb:AAC77833.1; (U38473) putative outer membrane lipoprotein; E=2e-07 gb:AAG24804.1; (AF285085) putative outer membrane lipoprotein; E=4e-07 swissprot:P76388; WZA_ECOLI PUTATIVE POLYSACCHARIDE EXPORT PROTEIN; E=5e-07 COG: wza; COG1596 Periplasmic protein involved in polysaccharide export; E=5e-08 aq_505; COG1596 Periplasmic protein involved in polysaccharide; E=5e-06. (471 aa)
RB1359Probable serine protease do-like DEGP; PMID: 10684935 best DB hits: BLAST: swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=1e-63 pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=3e-63 embl:CAA72164.1; (Y11304) ORF E0 [Rhodobacter capsulatus]; E=5e-62 COG: CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=1e-64 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=5e-63 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=3e-57 PFAM: PF02874; ATP synthase alpha/beta family,; E=0.027 PF00089; Trypsin; E=9.8e-30 [...] (629 aa)
dnaA-2Chromosomal replication initiator protein dnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (591 aa)
degP-2Probable serine protease DO-like; PMID: 9204764 PMID: 7845208 best DB hits: BLAST: pir:B81914; probable periplasmic serine proteinase (EC 3.4.21.-); E=1e-21 pir:S74643; proteinase hhoA (EC 3.4.-.-) - Synechocystis sp. (strain; E=1e-18 swissprot:Q52894; DEGP_RHIME PROBABLE SERINE PROTEASE DO-LIKE; E=3e-17 COG: NMB0532; COG0265 Trypsin-like serine proteases, typically; E=5e-22 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-18 XF2241; COG0265 Trypsin-like serine proteases, typically; E=4e-18 PFAM: PF01215; Cytochrome c oxidase subunit Vb; E=0.4 PF00089; Trypsin [...] (438 aa)
RB2621Phosphate regulon response regulator PhoB; PMID: 10629178 PMID: 3537313 PMID: 9878437 best DB hits: BLAST: gb:AAF15533.1; AF196490_3 (AF196490) phosphate regulon response; E=2e-35 swissprot:Q52990; PHOB_RHIME PHOSPHATE REGULON TRANSCRIPTIONAL; E=2e-31 embl:CAA11074.1; (AJ223073) phosphate regulatory protein; E=9e-31 COG: PA5360; COG0745 Response regulators consisting of a CheY-like; E=5e-31 phoB; COG0745 Response regulators consisting of a CheY-like receiver; E=7e-31 TM1655; COG0745 Response regulators consisting of a CheY-like; E=1e-30 PFAM: PF00072; Response regulator receiver doma; [...] (229 aa)
glnDUridylyltransferase/uridylyl-removing enzyme glnD; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. (883 aa)
glnB-2Nitrogen regulatory protein P-II; PMID: 2907369 PMID: 2885322 PMID: 2907369 PMID: 8226691 best DB hits: BLAST: pir:D82102; nitrogen regulatory protein P-II VC2239 [imported] -; E=9e-35 pir:H81961; nitrogen regulatory protein P-II 1 NMA0447 [imported] -; E=3e-34 pir:B81019; nitrogen regulatory protein P-II NMB1995 [imported] -; E=3e-34 COG: VC2239; COG0347 Nitrogen regulatory protein PII; E=9e-36 PFAM: PF00543; Nitrogen regulatory protein P-II; E=7.7e-53; Belongs to the P(II) protein family. (133 aa)
RB307NAD-dependent malic enzyme; PMID: 2644282 PMID: 36376 best DB hits: BLAST: swissprot:P16468; MAOX_BACST NAD-DEPENDENT MALIC ENZYME (NAD-ME); E=1e-141 embl:CAB72197.1; (AL138851) putative malate oxidoreductase; E=1e-135 pir:S74511; malic enzyme - Synechocystis sp. (strain PCC 6803); E=1e-118 COG: slr0721; COG0281 Malic enzyme; E=1e-119 PFAM: PF01842; ACT domain; E=7.3e-05 PF00390; Malic enzyme; E=0.034 PF01488; Shikimate / quinate 5-dehydrogen; E=0.17. (476 aa)
atoC-5Acetoacetate metabolism regulatory protein atoC; PMID: 8346225 PMID: 9278503 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=8e-80 swissprot:P21712; YFHA_ECOLI HYPOTHETICAL 49.1 KDA PROTEIN IN; E=3e-75 gb:AAG45333.1; AF273214_1 (AF273214) SasR [Myxococcus xanthus]; E=4e-74 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=8e-81 PFAM: PF00072; Response regulator receiver doma; E=5.1e-26 PF00158; Sigma-54 interaction domain; E=2.8e-114. (488 aa)
fliCFlagellin E; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (718 aa)
FliCFlagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (739 aa)
ntrC-3Nitrogen assimilation regulatory protein; PMID: 7553451 best DB hits: BLAST: swissprot:Q06065; ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY; E=1e-86 swissprot:P45671; NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY; E=4e-84 pir:S42745; nitrogen assimilation regulatory protein ntrC -; E=5e-84 COG: atoC; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-87 PFAM: PF00072; Response regulator receiver dom; E=2e-29 PF00004; ATPase family associated with v; E=0.34 PF00158; Sigma-54 interaction domain; E=5.2e-129. (514 aa)
RB4511Sensory transduction histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1637 aa)
RB4759Sensor protein fixL; PMID: 2046550 PMID: 1766374 best DB hits: BLAST: swissprot:P26489; FIXL_AZOCA SENSOR PROTEIN FIXL -----pir:; E=2e-48 swissprot:P23222; FIXL_BRAJA SENSOR PROTEIN FIXL ----- pir:; E=8e-45 swissprot:P10955; FIXL_RHIME SENSOR PROTEIN FIXL ----- pir:; E=2e-43 COG: BS_ykrQ_3; COG0642 Sensory transduction histidine kinases; E=3e-27 PFAM: PF00989; PAS domain; E=1.3e-13 PF00785; PAC motif; E=0.052 PF00512; His Kinase A (phosphoacceptor) doma; E=4.1e-09. (418 aa)
RB4994Osmolarity sensor protein envZ; PMID: 8063417 best DB hits: BLAST: pir:C83500; probable two-component sensor PA1158 [imported] -; E=6e-33 gb:AAG56596.1; AE005384_6 (AE005384) sensor histidine protein; E=2e-27 swissprot:P18392; RSTB_ECOLI SENSOR PROTEIN RSTB ----- pir:; E=2e-27 COG: PA1158; COG0642 Sensory transduction histidine kinases; E=6e-34 PFAM: PF00672; HAMP domain; E=8.4e-08 PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-15 PF02518; Histidine kinase-, DNA gyrase B-, p; E=1.2e-31. (433 aa)
RB5256Cellulase; PMID: 1955860 best DB hits: BLAST: pir:B72216; endoglucanase - Thermotoga maritima (strain MSB8); E=7e-85 swissprot:P25472; GUND_CLOCE ENDOGLUCANASE D PRECURSOR; E=3e-52 swissprot:P16218; GUNH_CLOTM ENDOGLUCANASE H PRECURSOR (EGH); E=5e-49 COG: TM1751; COG2730 Endoglucanase; E=6e-86 PFAM: PF00150; Cellulase (glycosyl hydrolase famil; E=5.3e-47. (528 aa)
RB5465PMID: 7699720 best DB hits: BLAST: pir:D83041; probable two-component response regulator PA4843; E=4e-20 pir:F82960; hypothetical protein PA5487 [imported] - Pseudomonas; E=5e-18 pir:A82428; sensory boxGGDEF family protein VCA0697 [imported] -; E=4e-17 COG: PA5487; COG2199 Diguanylate cyclase/phosphodiesterase domain 1; E=5e-19 PFAM: PF00072; Response regulator receiver doma; E=3.1e-13 PF00990; GGDEF domain; E=3.1e-35. (324 aa)
phoAProbable alkaline phosphatase; PMID: 8454193 PMID: 3537962 PMID: 7022451 best DB hits: BLAST: swissprot:P35483; PPBH_PSEAE ALKALINE PHOSPHATASE H PRECURSOR; E=2e-11 pdb:1ANI; A Chain A, Alkaline Phosphatase (D153h, K328h) -----; E=2e-11 pdb:2ANH; A Chain A, Alkaline Phosphatase (D153h) -----pdb:; E=3e-11 COG: PA3296; COG1785 Alkaline phosphatase; E=2e-12 PFAM: PF00245; Alkaline phosphatase; E=2.2e-09. (628 aa)
phoDProbable alkaline phosphatase D; PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=6e-09 pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=5e-08 pir:T35097; probable secreted alkaline phosphatase - Streptomyces; E=2e-06. (471 aa)
RB5943Probable response regulator; PMID: 7699720 PMID: 1454550 best DB hits: BLAST: embl:CAA47908.1; (X67676) phoP [Bacillus subtilis]; E=1e-15 gb:AAA22661.1; (M16775) phoP protein (put.); putative [Bacillus; E=1e-15 swissprot:P13792; PHOP_BACSU ALKALINE PHOSPHATASE SYNTHESIS; E=1e-15 COG: BS_phoP; COG0745 Response regulators consisting of a CheY-like; E=1e-16 sll0043_4; COG0784 CheY-like receiver domains; E=4e-15 Rv0757; COG0745 Response regulators consisting of a CheY-like; E=4e-15 PFAM: PF00072; Response regulator receiver doma; E=4.8e-28. (132 aa)
RB6350PMID: 10984043 best DB hits: BLAST: pir:E83450; probable cytochrome oxidase subunit (cbb3-type) PA1557; E=1e-134 pir:E81050; cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725; E=1e-132 pir:C83452; probable cytochrome oxidase subunit (cbb3-type) PA1554; E=1e-129 COG: PA1557; COG3278 Cbb3-type cytochrome oxidase, subunit 1; E=1e-135 NMB1724; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; E=8e-38 slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=6e-12 PFAM: PF00115; Cytochrome C and Quinol oxidase poly; E=3.4e-65 PF02433; Cytochrome C oxidase, mono-heme subu [...] (832 aa)
RB6353PMID: 10952301 best DB hits: BLAST: pir:C82200; cytochrome c oxidase, chain CcoP VC1439 [similarity] -; E=7e-15 gb:AAB02559.1; (U58092) cbb3-type cytochrome c oxidase CcoP; E=1e-13 pir:A83452; probable cytochrome c PA1552 [imported] - Pseudomonas; E=1e-13 COG: VC1439; COG2010 Cytochrome c, mono- and diheme variants; E=7e-16 PFAM: PF00034; Cytochrome c; E=4.2e-11. (205 aa)
RB6469Best DB hits: BLAST: pir:F82572; sodium ABC transporter ATP-binding protein XF2329; E=8e-44 swissprot:P46903; NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA; E=2e-40 pir:B75459; sodium extrusion protein NatA - Deinococcus radiodurans; E=3e-39 COG: XF2329; COG1131 ABC-type multidrug transport system, ATPase; E=8e-45 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=7e-32 PFAM: PF00448; SRP54-type protein, GTPase do; E=0.26 PF00005; ABC transporter; E=6.2e-51. (252 aa)
natBPMID: 10567266 best DB hits: BLAST: pir:A75459; sodium extrusion protein NatB - Deinococcus radiodurans; E=1e-09 swissprot:P46904; NATB_BACSU PROTEIN NATB -----pir: B69666; E=3e-07 ddbj:BAA22237.1; (AB000617) NatB [Bacillus subtilis]; E=0.002 COG: DR0926; COG1668 ATP-dependent Na+ efflux pump membrane component; E=1e-10 ybhS; COG0842 Permease component of an ABC-transporter; E=0.003 PFAM: PF02517; CAAX amino terminal protease family; E=1.8e-15. (701 aa)
RB6491RNA polymerase subunit sigma-54; PMID: 2203540 best DB hits: BLAST: gb:AAC82369.1; (AF061965) RNA polymerase subunit sigma-54; E=1e-121 gb:AAG58336.1; AE005548_7 (AE005548) RNA polymerase, sigma(54 or; E=7e-59 swissprot:P24255; RP54_ECOLI RNA POLYMERASE SIGMA-54 FACTOR; E=2e-58 COG: rpoN; COG1508 DNA-directed RNA polymerase specialized sigma; E=2e-59 PFAM: PF00356; Bacterial regulatory proteins; E=0.018 PF00309; Sigma-54 factors family; E=4e-155. (526 aa)
fliC-2Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (685 aa)
sphXPhosphate ABC transporter, periplasmic phosphate-binding protein; PMID: 95075296 PMID: 7741855 best DB hits: BLAST: swissprot:P39665; SPHX_SYNP7 SPHX PROTEIN PRECURSOR -----pir:; E=9e-59 swissprot:Q55200; SPHX_SYNY3 SPHX PROTEIN HOMOLOG PRECURSOR; E=4e-56 gb:AAB89890.1; (AE001010) phosphate ABC transporter, periplasmic; E=3e-53 COG: sll0679; COG0226 ABC-type phosphate transport system, periplasmic; E=4e-57 PFAM: PF01449; Phosphate-binding protein; E=2.2e-64. (310 aa)
glnIIGlutamine synthetase II; PMID: 2575672 PMID: 1357539 best DB hits: BLAST: swissprot:P04772; GLN2_BRAJA GLUTAMINE SYNTHETASE II; E=1e-103 swissprot:Q02154; GLN2_RHILP GLUTAMINE SYNTHETASE II; E=1e-99 swissprot:P45626; GLN2_RHIME GLUTAMINE SYNTHETASE II; E=9e-97 COG: YPR035w; COG0174 Glutamine synthase; E=5e-83 PFAM: PF00120; Glutamine synthetase; E=3.6e-133. (366 aa)
RB7410Putative histidine kinase (PhoR1); Best DB hits: BLAST: embl:CAB37946.1; (AJ133131) putative histidine kinase (PhoR1); E=2e-43 swissprot:P35164; RESE_BACSU SENSOR PROTEIN RESE -----pir:; E=7e-40 embl:CAB64973.1; (AJ012050) VicK protein [Enterococcus faecalis]; E=1e-38 COG: BH4026; COG0642 Sensory transduction histidine kinases; E=2e-39 PFAM: PF00989; PAS domain; E=0.0015 PF00512; His Kinase A (phosphoacceptor) doma; E=9.2e-20 PF02518; Histidine kinase-, DNA gyrase B-, p; E=7.3e-38. (445 aa)
hydH-3Sensor protein HYDH; PMID: 2666400 best DB hits: BLAST: swissprot:P14377; HYDH_ECOLI SENSOR PROTEIN HYDH ----- pir:; E=5e-19 gb:AAG59200.1; AE005632_1 (AE005632) sensor kinase for HydG,; E=6e-18 swissprot:P07168; VIRA_AGRT6 WIDE HOST RANGE VIRA PROTEIN (WHR; E=6e-18 COG: hydH; COG0642 Sensory transduction histidine kinases; E=5e-20 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1.1e-06 PF02518; Histidine kinase-, DNA gyrase B-, p; E=4e-35. (279 aa)
RB754Probable polysaccharide export protein; PMID: 7596293 best DB hits: BLAST: pir:S75310; gumB protein - Synechocystis sp. (strain PCC 6803); E=3e-06 pir:E72350; hypothetical protein TM0638 - Thermotoga maritima; E=0.005 swissprot:Q46629; AMSH_ERWAM AMYLOVORAN EXPORT OUTER MEMBRANE; E=0.012 COG: sll1581; COG1596 Periplasmic protein involved in polysaccharide; E=3e-07 yccZ; COG1596 Periplasmic protein involved in polysaccharide export; E=0.009. (364 aa)
natABest DB hits: BLAST: pir:C69049; ABC transporter (ATP-binding protein) - Methanobacterium; E=5e-47 swissprot:P46903; NATA_BACSU ATP-BINDING TRANSPORT PROTEIN NATA; E=2e-46 pir:F82572; sodium ABC transporter ATP-binding protein XF2329; E=5e-46 COG: MTH1370; COG1131 ABC-type multidrug transport system, ATPase; E=5e-48 PFAM: PF02223; Thymidylate kinase; E=0.42 PF00005; ABC transporter; E=1.6e-61. (273 aa)
natB-2Best DB hits: BLAST: pir:A75459; sodium extrusion protein NatB - Deinococcus radiodurans; E=2e-15 swissprot:P46904; NATB_BACSU PROTEIN NATB ----- pir: B69666; E=1e-10 ddbj:BAA22237.1; (AB000617) NatB [Bacillus subtilis]; E=5e-05 COG: DR0926; COG1668 ATP-dependent Na+ efflux pump membrane component; E=1e-16 BS_ydiL; COG1266 Predicted metal-dependent membrane protease; E=1e-04 PFAM: PF02517; CAAX amino terminal protease family; E=1.1e-19. (773 aa)
RB7911Best DB hits: BLAST: pir:T35287; probable secreted proteinase - Streptomyces coelicolor; E=3e-10 gb:AAK02818.1; (AE006110) HtrA [Pasteurella multocida]; E=2e-08 pir:S47170; hypothetical protein 34K - Mycobacterium; E=3e-08 COG: VNG0226G; COG0265 Trypsin-like serine proteases, typically; E=9e-09 htrA; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-08 aq_1450; COG0265 Trypsin-like serine proteases, typically; E=5e-08 PFAM: PF00089; Trypsin; E=0.038. (408 aa)
csrA-3Probable carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (70 aa)
whiGRNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (272 aa)
phoD-2Probable alkaline phosphatase D [Precursor]; PMID: 8760916 best DB hits: BLAST: embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=2e-12 ddbj:BAB10478.1; (AB016888) gene_id:MDH9.6~similar to unknown; E=2e-12 embl:CAB92825.1; (AL356892) hypothetical protein [Streptomyces; E=6e-05. (470 aa)
RB8835Probable secreted alkaline phosphatase (fragment); Best DB hits: BLAST: embl:CAB99170.1; (AL390188) putative secreted alkaline; E=0.003 embl:CAC18240.1; (AL451018) conserved hypothetical protein; E=0.004 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=0.10 PFAM: PF02908; Purple acid phosphatase, N-term; E=0.89 PF00041; Fibronectin type III domain; E=0.42. (620 aa)
phoD-3Alkaline phosphatase D [Precursor]; PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-124 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-110 pir:T50595; probable alkaline phosphatase [imported] - Streptomyces; E=1e-103. (527 aa)
wecBPMID: 8226648 best DB hits: BLAST: pir:A82264; UDP-N-acetylglucosamine 2-epimerase VC0917 [imported] -; E=1e-106 pir:T44828; probable UDP-N-acetylglucosamine 2-epimerase (EC; E=1e-101 swissprot:P27828; WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; E=1e-101 COG: VC0917; COG0381 UDP-N-acetylglucosamine 2-epimerase; E=1e-107 PFAM: PF02350; UDP-N-acetylglucosamine 2-epimera; E=1.7e-162; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (380 aa)
phoD-4Probable alkaline phosphatase D [Precursor]; PMID: 8760916 best DB hits: BLAST: pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=6e-05 ddbj:BAA06483.1; (D30808) unknown [Bacillus subtilis]; E=1e-04 swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=1e-04. (685 aa)
pomAChemotaxis pomA protein; PMID: 99254111 best DB hits: BLAST: swissprot:P46826; YTXD_BACME HYPOTHETICAL 29.3 KD PROTEIN IN CCPA; E=9e-35 swissprot:O06873; POMA_VIBAL CHEMOTAXIS POMA PROTEIN -----; E=2e-31 gb:AAD15904.1; (AF069391) sodium-driven polar flagellar protein; E=3e-31 COG: BS_ytxD; COG1291 Flagellar motor component; E=5e-32 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=0.0002. (253 aa)
htrA-3PMID: 8576051 best DB hits: BLAST: swissprot:P18584; DEGP_CHLTR PROBABLE SERINE PROTEASE DO-LIKE; E=2e-39 pir:B81728; serine proteinase, HtrADegQ/DegS family TC0210; E=4e-39 swissprot:Q9Z6T0; DEGP_CHLPN PROBABLE SERINE PROTEASE DO-LIKE; E=2e-36 COG: CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 CPn0979; COG0265 Trypsin-like serine proteases, typically; E=2e-37 degQ; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=4e-31 PFAM: PF00089; Trypsin; E=3.9e-17 PF00595; PDZ domain (Also known as DHR or GLG; E=1.5e-07. (462 aa)
glnB-4Nitrogen regulatory protein P-II; PMID: 7590157 PMID: 9733647 best DB hits: BLAST: swissprot:Q10960; GLNB_MYCTU NITROGEN REGULATORY PROTEIN P-II; E=5e-16 swissprot:O30794; GLNB_NOSPU NITROGEN REGULATORY PROTEIN P-II (PII; E=4e-15 swissprot:P80016; GLNB_SYNP7 NITROGEN REGULATORY PROTEIN P-II (PII; E=5e-15 COG: Rv2919c; COG0347 Nitrogen regulatory protein PII; E=5e-17 PFAM: PF00543; Nitrogen regulatory protein P-II; E=1.2e-10. (105 aa)
cydACytochrome oxidase chain I; PMID: 2843510 best DB hits: BLAST: pir:F72119; cytochrome oxidase chain I - Chlamydophila pneumoniae; E=3e-89 pir:A81721; cytochrome D ubiquinol oxidase, chain I TC0281; E=7e-86 pir:F71567; probable cytochrome oxidase chain I - Chlamydia; E=2e-85 COG: CPn0102; COG1271 Cytochrome bd-type quinol oxidase, subunit 1; E=3e-90 PFAM: PF01654; Bacterial Cytochrome Ubiquinol Ox; E=1.3e-170. (491 aa)
cydBCytochrome d oxidase subunit; PMID: 2843510 best DB hits: BLAST: gb:AAG01153.1; AF284438_4 (AF284438) cytochrome d oxidase subunit; E=3e-51 pir:H70417; cytochrome oxidase d subunit II - Aquifex aeolicus; E=1e-49 pir:G72119; cytochrome D ubiquinol oxidase, chain II CP0671; E=2e-47 COG: aq_1358; COG1294 Cytochrome bd-type quinol oxidase, subunit 2; E=9e-51 PFAM: PF02322; Cytochrome oxidase subunit II; E=4.7e-139. (342 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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