(5 nodes) Triterpenoid metabolic process, and Phosphorylase superfamily network (Methylococcus capsulatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MCA0810	Putative membrane protein; Identified by similarity to GP:3164083. (884 aa)
	MCA0811	Identified by match to protein family HMM PF01048. (236 aa)
	sqhC	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787. (654 aa)
	sqs	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494. (362 aa)
	MCA0815	Identified by match to protein family HMM PF04055. (371 aa)

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0810	MCA0811	MCA0810	MCA0811	Putative membrane protein; Identified by similarity to GP:3164083.	Identified by match to protein family HMM PF01048.	0.948
MCA0810	MCA0815	MCA0810	MCA0815	Putative membrane protein; Identified by similarity to GP:3164083.	Identified by match to protein family HMM PF04055.	0.834
MCA0810	sqhC	MCA0810	MCA0812	Putative membrane protein; Identified by similarity to GP:3164083.	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	0.947
MCA0810	sqs	MCA0810	MCA0813	Putative membrane protein; Identified by similarity to GP:3164083.	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	0.882
MCA0811	MCA0810	MCA0811	MCA0810	Identified by match to protein family HMM PF01048.	Putative membrane protein; Identified by similarity to GP:3164083.	0.948
MCA0811	MCA0815	MCA0811	MCA0815	Identified by match to protein family HMM PF01048.	Identified by match to protein family HMM PF04055.	0.840
MCA0811	sqhC	MCA0811	MCA0812	Identified by match to protein family HMM PF01048.	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	0.956
MCA0811	sqs	MCA0811	MCA0813	Identified by match to protein family HMM PF01048.	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	0.910
MCA0815	MCA0810	MCA0815	MCA0810	Identified by match to protein family HMM PF04055.	Putative membrane protein; Identified by similarity to GP:3164083.	0.834
MCA0815	MCA0811	MCA0815	MCA0811	Identified by match to protein family HMM PF04055.	Identified by match to protein family HMM PF01048.	0.840
MCA0815	sqhC	MCA0815	MCA0812	Identified by match to protein family HMM PF04055.	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	0.938
MCA0815	sqs	MCA0815	MCA0813	Identified by match to protein family HMM PF04055.	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	0.709
sqhC	MCA0810	MCA0812	MCA0810	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	Putative membrane protein; Identified by similarity to GP:3164083.	0.947
sqhC	MCA0811	MCA0812	MCA0811	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	Identified by match to protein family HMM PF01048.	0.956
sqhC	MCA0815	MCA0812	MCA0815	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	Identified by match to protein family HMM PF04055.	0.938
sqhC	sqs	MCA0812	MCA0813	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	0.998
sqs	MCA0810	MCA0813	MCA0810	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	Putative membrane protein; Identified by similarity to GP:3164083.	0.882
sqs	MCA0811	MCA0813	MCA0811	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	Identified by match to protein family HMM PF01048.	0.910
sqs	MCA0815	MCA0813	MCA0815	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	Identified by match to protein family HMM PF04055.	0.709
sqs	sqhC	MCA0813	MCA0812	Squalene synthase; Identified by similarity to GP:3164081; match to protein family HMM PF00494.	Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.	0.998

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About