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rpmC rpmC MCA0004 MCA0004 edd edd mreB mreB MCA0198 MCA0198 guaB guaB MCA0317 MCA0317 rpmE rpmE rpsP rpsP MCA0435 MCA0435 MCA0482 MCA0482 MCA0499 MCA0499 fchA fchA MCA0526 MCA0526 hupB hupB rpsB rpsB MCA0580 MCA0580 MCA0593 MCA0593 MCA0600 MCA0600 rpmI rpmI rplT rplT ihfA ihfA sqhC sqhC MCA0873 MCA0873 rplM rplM rpsI rpsI MCA0982 MCA0982 MCA1031 MCA1031 ctc ctc rplK rplK rplA rplA rplJ rplJ rplL rplL MCA1190 MCA1190 MCA1228 MCA1228 rpsO rpsO infB infB recR recR MCA1327 MCA1327 ihfB ihfB rpsA rpsA recO recO MCA1509 MCA1509 MCA1516 MCA1516 MCA1518 MCA1518 MCA1551 MCA1551 cobB-2 cobB-2 MCA1630 MCA1630 MCA1730 MCA1730 MCA1731 MCA1731 MCA1732 MCA1732 dnaB dnaB dtD dtD fis fis MCA1782 MCA1782 MCA1814 MCA1814 recN recN recQ recQ sspB sspB rpmF rpmF rplI rplI rpsR rpsR rpsF rpsF MCA2117 MCA2117 MCA2191 MCA2191 rplU rplU rpmA rpmA rpsT rpsT rpmB rpmB rpmG rpmG rplQ rplQ rpsD rpsD rpsK rpsK rpmJ rpmJ rplO rplO rpmD rpmD rpsE rpsE rplR rplR rplF rplF rpsH rpsH rpsN rpsN rplE rplE rplX rplX rplN rplN rpsQ rpsQ rplP rplP rpsC rpsC rplV rplV rpsS rpsS rplB rplB rplW rplW rplD rplD rplC rplC rpsJ rpsJ rpsG rpsG smc smc MCA2522 MCA2522 hepA hepA MCA2532 MCA2532 MCA2544 MCA2544 MCA2567 MCA2567 priA priA MCA2648 MCA2648 cbbL cbbL cbbS cbbS cbbQ cbbQ MCA2756 MCA2756 MCA2766 MCA2766 rnfC rnfC MCA2828 MCA2828 MCA2873 MCA2873 MCA2888 MCA2888 rnfC-2 rnfC-2 nth nth MCA2900 MCA2900 MCA2922 MCA2922 MCA2937 MCA2937 MCA2944 MCA2944 hup hup MCA2955 MCA2955 rpsU rpsU dnaG dnaG recF recF dnaA dnaA rpmH rpmH MCA3042 MCA3042 MCA3048 MCA3048 MCA3053 MCA3053 MCA3058 MCA3058 MCA3087 MCA3087
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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rpmCRibosomal protein L29; Identified by similarity to SP:P02429; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family. (65 aa)
MCA0004ParB family protein; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (282 aa)
edd6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (609 aa)
mreBRod shape-determining protein MreB; Identified by similarity to SP:P13519; match to protein family HMM PF06723; match to protein family HMM TIGR00904. (347 aa)
MCA0198Identified by match to protein family HMM PF00149. (337 aa)
guaBInosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (487 aa)
MCA0317Selenium-binding family protein; Identified by similarity to SP:Q63836. (459 aa)
rpmERibosomal protein L31; Binds the 23S rRNA. (67 aa)
rpsPRibosomal protein S16; Identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (84 aa)
MCA0435Conserved hypothetical protein; Identified by similarity to OMNI:VC1548. (223 aa)
MCA0482Hypothetical protein; Identified by Glimmer2; putative. (309 aa)
MCA0499Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04177; match to protein family HMM PF04828. (123 aa)
fchAMethenyltetrahydrofolate cyclohydrolase; Identified by similarity to SP:Q49135; match to protein family HMM PF04961. (207 aa)
MCA0526Conserved domain protein; Identified by similarity to OMNI:NTL02SC1751; match to protein family HMM PF00596. (236 aa)
hupBDNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa)
rpsBRibosomal protein S2; Identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. (256 aa)
MCA0580Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724. (144 aa)
MCA0593Identified by similarity to GP:4557191; match to protein family HMM PF00069; match to protein family HMM PF00481. (595 aa)
MCA0600Conserved hypothetical protein; Identified by similarity to GP:4545243. (341 aa)
rpmIRibosomal protein L35; Identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rplTRibosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
ihfAIntegration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (110 aa)
sqhCSqualene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787. (654 aa)
MCA0873ATP-dependent protease La domain protein. (167 aa)
rplMRibosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
rpsIRibosomal protein S9; Identified by similarity to SP:P02363; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. (130 aa)
MCA0982Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (176 aa)
MCA1031Putative ribosomal subunit interface protein. (119 aa)
ctcRibosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (202 aa)
rplKRibosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (143 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa)
rplJRibosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (175 aa)
rplLRibosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa)
MCA1190Hypothetical protein; Identified by Glimmer2; putative. (300 aa)
MCA1228Putative TolA protein; Identified by similarity to SP:P50600; match to protein family HMM PF06519; match to protein family HMM TIGR01352. (467 aa)
rpsORibosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa)
infBTranslation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (868 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa)
MCA1327Conserved hypothetical protein TIGR00103; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
ihfBIntegration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (95 aa)
rpsARibosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (555 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (242 aa)
MCA1509TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. (699 aa)
MCA1516TPR domain protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to GP:17430189; match to protein family HMM PF00515. (360 aa)
MCA1518TPR domain protein, interruption-N; This gene is interrupted by an IS element; identified by match to protein family HMM PF00515. (258 aa)
MCA1551Hypothetical protein; Identified by Glimmer2; putative. (179 aa)
cobB-2Transcriptional regulator, Sir2 family; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily. (255 aa)
MCA1630DnaA domain protein; Identified by similarity to SP:P03004; match to protein family HMM PF00308. (334 aa)
MCA1730Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (149 aa)
MCA1731Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (126 aa)
MCA1732Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (167 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (461 aa)
dtDD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (153 aa)
fisDNA-binding protein Fis; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. (96 aa)
MCA1782ATPase, AAA family; Identified by similarity to GP:9948679; match to protein family HMM PF00004. (435 aa)
MCA1814Putative ATP:cob(I)alamin adenosyltransferase; Identified by similarity to GP:17429685; match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family. (194 aa)
recNDNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (558 aa)
recQATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (719 aa)
sspBIdentified by similarity to SP:P25663; match to protein family HMM PF04386. (130 aa)
rpmFRibosomal protein L32; Identified by similarity to SP:P02435; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (64 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (148 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (128 aa)
MCA2117Rhodanese-like domain/ankyrin repeat domain protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide. (254 aa)
MCA2191Hypothetical protein; Identified by Glimmer2; putative. (698 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
rpmARibosomal protein L27; Identified by similarity to SP:P02427; match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. (85 aa)
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (92 aa)
rpmBRibosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
rpmGRibosomal protein L33; Identified by similarity to SP:P02436; match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. (51 aa)
rplQRibosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. (119 aa)
rpsDRibosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa)
rpsKRibosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa)
rpmJRibosomal protein L36; Identified by similarity to SP:P21194; match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rplORibosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa)
rpmDRibosomal protein L30; Identified by similarity to SP:P02430; match to protein family HMM PF00327; match to protein family HMM TIGR01308. (61 aa)
rpsERibosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (169 aa)
rplRRibosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (117 aa)
rplFRibosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rpsHRibosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
rpsNRibosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rplERibosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa)
rplXRibosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (105 aa)
rplNRibosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQRibosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (86 aa)
rplPRibosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
rpsCRibosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (223 aa)
rplVRibosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (110 aa)
rpsSRibosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (90 aa)
rplBRibosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (281 aa)
rplWRibosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa)
rplDRibosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (205 aa)
rplCRibosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (211 aa)
rpsJRibosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rpsGRibosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
smcChromosome segregation SMC protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1109 aa)
MCA2522DnaA domain protein; Identified by similarity to OMNI:NTL03PA00948; Belongs to the DnaA family. HdA subfamily. (232 aa)
hepARNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. (949 aa)
MCA2532Heat shock protein, Hsp20 family; Identified by similarity to SP:Q06823; match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (144 aa)
MCA2544Putative membrane protein. (506 aa)
MCA2567Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (245 aa)
priAPrimosomal protein N`; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (733 aa)
MCA2648Prophage LambdaMc01, DNA primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613. (755 aa)
cbbLRibulose bisphosphate carboxylase, large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (473 aa)
cbbSRibulose bisphosphate carboxylase, small subunit; Identified by similarity to GP:17646562; match to protein family HMM PF00101. (118 aa)
cbbQcbbQ protein; Identified by similarity to GP:4105515; match to protein family HMM PF07728. (266 aa)
MCA2756Conserved hypothetical protein; Identified by similarity to SP:Q50695. (461 aa)
MCA2766Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS01176; match to protein family HMM PF01724. (144 aa)
rnfCElectron transport complex, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (495 aa)
MCA2828Cold shock domain family protein; Identified by match to protein family HMM PF00313. (90 aa)
MCA2873Squalene cyclase family protein; Identified by similarity to GP:1098635; match to protein family HMM PF00432; match to protein family HMM TIGR01787. (670 aa)
MCA2888Putative type IV pilus biogenesis protein PilF; Identified by similarity to GP:1162960; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521. (255 aa)
rnfC-2Electron transport complex, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (523 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (213 aa)
MCA2900Prophage MuMc02, DNA methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family. (265 aa)
MCA2922Conserved hypothetical protein; Identified by similarity to GP:16502711. (150 aa)
MCA2937Hypothetical protein; Identified by Glimmer2; putative. (91 aa)
MCA2944Hypothetical protein; Identified by Glimmer2; putative. (202 aa)
hupProphage MuMc02, DNA-binding protein HU; Identified by similarity to SP:P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (95 aa)
MCA2955Putative prophage MuMc02, transposase protein A; Identified by match to protein family HMM PF00665. (709 aa)
rpsURibosomal protein S21; Identified by similarity to SP:P02379; match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (77 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (571 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (359 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (442 aa)
rpmHRibosomal protein L34; Identified by similarity to SP:P02437; match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
MCA3042Hypothetical protein; Identified by Glimmer2; putative. (228 aa)
MCA3048Hypothetical protein; Identified by Glimmer2; putative. (228 aa)
MCA3053Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04524; match to protein family HMM PF07793. (732 aa)
MCA3058Conserved hypothetical protein; Identified by similarity to GP:17431649; match to protein family HMM PF07311. (69 aa)
MCA3087Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03075. (595 aa)
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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