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nifH nifH nifD nifD nifK nifK pmoC3 pmoC3 nasA nasA nirD nirD nirB nirB MCA0594 MCA0594 MCA0910 MCA0910 MCA0956 MCA0956 gluD gluD cah cah MCA1442 MCA1442 MCA1665 MCA1665 glnA glnA MCA1684 MCA1684 pmoB pmoB pmoA pmoA pmoC1 pmoC1 gltB gltB gltD gltD MCA2400 MCA2400 MCA2401 MCA2401
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nifHNitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (293 aa)
nifDNitrogenase molybdenum-iron protein alpha chain; Identified by similarity to SP:P06120; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862. (486 aa)
nifKNitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (519 aa)
pmoC3Methane monooxygenase, C subunit; Identified by similarity to GP:14456716; match to protein family HMM PF04896. (253 aa)
nasANitrate reductase; Identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (879 aa)
nirDNitrite reductase [NAD(P)H], small subunit; Identified by similarity to SP:P42436; match to protein family HMM PF00355; match to protein family HMM TIGR02378. (118 aa)
nirBNitrite reductase [NAD(P)H], large subunit; Identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (820 aa)
MCA0594Putative nitrate transporter; Identified by similarity to SP:P46907; match to protein family HMM PF07690. (424 aa)
MCA0910Putative carbonic anhydrase; Identified by similarity to GP:13786684; match to protein family HMM PF00484. (192 aa)
MCA0956Hydroxylamine oxydoreductase; Identified by similarity to SP:Q50925. (559 aa)
gluDGlutamate dehydrogenase, NAD-specific; Identified by similarity to SP:P80053; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (374 aa)
cahCarbonic anhydrase; Identified by similarity to SP:O52538; match to protein family HMM PF00194. (264 aa)
MCA1442Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (214 aa)
MCA1665Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (238 aa)
glnAGlutamine synthetase, type I; Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. (469 aa)
MCA1684Conserved domain protein; Identified by similarity to GP:11830835; match to protein family HMM PF05088. (1122 aa)
pmoBMethane monooxygenase, B subunit; Methane monooxygenase is responsible for the initial oxygenation of methane to methanol in methanotrophs. At least in vitro, specific quinols can replace NADH as reductants. (414 aa)
pmoAMethane monooxygenase, A subunit; Non-catalytic subunit of the methane monooxygenase that is responsible for the initial oxygenation of methane to methanol in methanotrophs. At least in vitro, specific quinols can replace NADH as reductants. (247 aa)
pmoC1Methane monooxygenase, C subunit; Identified by similarity to GP:1894818; match to protein family HMM PF04896. (260 aa)
gltBGlutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898. (1542 aa)
gltDGlutamate synthase, NADH/NADPH small subunit; Identified by similarity to GP:17429987; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317. (479 aa)
MCA2400Putative nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008. (481 aa)
MCA2401Conserved domain protein; Identified by similarity to OMNI:NTL01ATA0505. (200 aa)
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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