STRINGSTRING
rfbA rfbA gmd gmd VC_0244 VC_0244 VC_0245 VC_0245 VC_0246 VC_0246 VC_0247 VC_0247 VC_0252 VC_0252 VC_0259 VC_0259 VC_0260 VC_0260 VC_0262 VC_0262 VC_0263 VC_0263 VC_0600 VC_0600 VC_0917 VC_0917 VC_0918 VC_0918 VC_0919 VC_0919 VC_0920 VC_0920 VC_0921 VC_0921 VC_0922 VC_0922 VC_0924 VC_0924 VC_0925 VC_0925 VC_0926 VC_0926 VC_0927 VC_0927 VC_0928 VC_0928 VC_0931 VC_0931 VC_0934 VC_0934 VC_0935 VC_0935 VC_0936 VC_0936 VC_0937 VC_0937 VC_0938 VC_0938 VC_0939 VC_0939 VC_A0780 VC_A0780
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rfbAMannose-1-phosphate guanylyltransferase; Similar to GB:X59554 SP:Q07024 PID:48383; identified by sequence similarity; putative. (465 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (373 aa)
VC_0244Perosamine synthase; Similar to GB:X59554 PID:48386; identified by sequence similarity; putative; Belongs to the DegT/DnrJ/EryC1 family. (367 aa)
VC_0245rfbG protein; Similar to GB:X59554 PID:48387; identified by sequence similarity; putative. (463 aa)
VC_0246lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48388; identified by sequence similarity; putative. (264 aa)
VC_0247lipopolysaccharide/O-antigen transport protein; Similar to GB:X59554 PID:48389; identified by sequence similarity; putative. (271 aa)
VC_0252Acetyltransferase RfbO, CysE/LacA/LpxA/NodL family; Similar to GB:X59554 PID:48394; identified by sequence similarity; putative. (188 aa)
VC_0259Lipopolysaccharide biosynthesis protein RfbV; Similar to GB:X59554 PID:48400 PID:1929424; identified by sequence similarity; putative. (410 aa)
VC_0260Mannosyl-transferase; Similar to PID:1929425; identified by sequence similarity; putative. (621 aa)
VC_0262UDP-glucose 4-epimerase; Similar to PID:1929426; identified by sequence similarity; putative. (323 aa)
VC_0263Galactosyl-transferase, putative; Similar to PID:1929427; identified by sequence similarity; putative. (184 aa)
VC_0600Hypothetical protein; Identified by Glimmer2; putative. (450 aa)
VC_0917UDP-N-acetylglucosamine 2-epimerase; Similar to GB:M87049 SP:P27828 GB:L18799 PID:148189 PID:304919; identified by sequence similarity; putative; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (372 aa)
VC_0918UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Similar to PID:600868 SP:Q45410; identified by sequence similarity; putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (413 aa)
VC_0919Serine acetyltransferase-related protein; Similar to GB: GB: GB: PID:1107505 PID:1184048; identified by sequence similarity; putative. (184 aa)
VC_0920Exopolysaccharide biosynthesis protein EpsF, putative; Similar to GP:1276879; identified by sequence similarity; putative. (382 aa)
VC_0921Polysaccharide export protein, putative; Similar to PID:747670 SP:Q48457; identified by sequence similarity; putative. (469 aa)
VC_0922Hypothetical protein; Identified by Glimmer2; putative. (406 aa)
VC_0924capK protein, putative; Similar to GB:U10927 SP:P39860 PID:506707; identified by sequence similarity; putative. (446 aa)
VC_0925Polysaccharide biosynthesis protein, putative; Similar to GB:AE000666; identified by sequence similarity; putative. (365 aa)
VC_0926Hypothetical protein; Identified by Glimmer2; putative. (390 aa)
VC_0927UDP-N-acetyl-D-mannosamine transferase; Similar to GB:U09239 PID:485280; identified by sequence similarity; putative; Belongs to the glycosyltransferase 26 family. (250 aa)
VC_0928Hypothetical protein; Identified by Glimmer2; putative. (271 aa)
VC_0931Conserved hypothetical protein; Identified by Glimmer2; putative. (438 aa)
VC_0934Capsular polysaccharide biosynthesis glycosyltransferase, putative; Similar to GB:U00096 SP:P71241 PID:1407618 PID:1736749 PID:1736753; identified by sequence similarity; putative. (465 aa)
VC_0935Hypothetical protein; Identified by Glimmer2; putative. (398 aa)
VC_0936Polysaccharide export-related protein; Similar to GB:L05588 SP:Q02728 PID:152191; identified by sequence similarity; putative. (175 aa)
VC_0937Exopolysaccharide biosynthesis protein, putative; Similar to GP:3493609; identified by sequence similarity; putative. (737 aa)
VC_0938Hypothetical protein; Identified by Glimmer2; putative. (235 aa)
VC_0939Hypothetical protein; Identified by Glimmer2; putative. (144 aa)
VC_A0780UDP-glucose 6-dehydrogenase; Similar to GP:3721692; identified by sequence similarity; putative. (388 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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