STRINGSTRING
VC_0032 VC_0032 VC_0048 VC_0048 VC_1879 VC_1879 VC_1917 VC_1917 VC_2719 VC_2719
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VC_0032ComM-related protein; Similar to GB:L42023 SP:P45049 PID:1006428 PID:1221236 PID:1205364; identified by sequence similarity; putative. (507 aa)
VC_0048Smf protein; Similar to GB:L42023 SP:P43862 PID:1006171 PID:1221098 PID:609332; identified by sequence similarity; putative. (371 aa)
VC_1879Rec2-related protein; Similar to GB:L42023 SP:P44408 PID:1003026 PID:1221968 PID:1204319; identified by sequence similarity; putative. (752 aa)
VC_1917Conserved hypothetical protein; Identified by Glimmer2; putative. (103 aa)
VC_2719ComF-related protein; Similar to SP:P46846 PID:606348 GB:U00096 PID:1789818; identified by sequence similarity; putative. (286 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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