STRINGSTRING
VC_0716 VC_0716 VC_1009 VC_1009 rnfE rnfE rnfG rnfG rnfD rnfD rnfC rnfC rnfB rnfB rnfA rnfA VC_1180 VC_1180 VC_1181 VC_1181 VC_1570 VC_1570 VC_1571 VC_1571 VC_1574 VC_1574 VC_1575 VC_1575 VC_1577 VC_1577 VC_1578 VC_1578 VC_1580 VC_1580 VC_1581 VC_1581 VC_1582 VC_1582 VC_1842 VC_1842 VC_1843 VC_1843 VC_1844 VC_1844 VC_2286 VC_2286 VC_2288 VC_2288 VC_2289 VC_2289 nqrF nqrF nqrE nqrE nqrD nqrD nqrC nqrC nqrB nqrB nqrA nqrA VC_A0152 VC_A0152 VC_A0153 VC_A0153 VC_A0154 VC_A0154 VC_A0155 VC_A0155 VC_A0156 VC_A0156 VC_A0157 VC_A0157 VC_A0158 VC_A0158 VC_A0159 VC_A0159 VC_A0160 VC_A0160 tnaA tnaA VC_A0872 VC_A0872 VC_A0873 VC_A0873
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VC_0716Ferredoxin; Similar to GB:L42023 PID:1003938 PID:1222462 PID:1204778 SP:P44746; identified by sequence similarity; putative. (84 aa)
VC_1009Conserved hypothetical protein; Identified by Glimmer2; putative. (146 aa)
rnfERnfE-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (230 aa)
rnfGRnfG-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. (209 aa)
rnfDRnfD-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (348 aa)
rnfCRnfC-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. (801 aa)
rnfBRnfB-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (195 aa)
rnfARnfA-related protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (213 aa)
VC_1180Transport ATP-binding protein CydC; Similar to GB:L10383 SP:P23886 GB:L25859 PID:145165 PID:146480; identified by sequence similarity; putative. (573 aa)
VC_1181Transport ATP-binding protein CydD; Similar to GB:L42023 SP:P45082 PID:1006505 PID:1221280 PID:1205402; identified by sequence similarity; putative. (595 aa)
VC_1570Quinol oxidase, subunit II; Similar to GP:3550333; identified by sequence similarity; putative. (330 aa)
VC_1571Quinol oxidase, subunit I; Similar to GP:3550332; identified by sequence similarity; putative. (445 aa)
VC_1574Hypothetical protein; Identified by Glimmer2; putative. (127 aa)
VC_1575Hypothetical protein; Identified by Glimmer2; putative. (152 aa)
VC_1577Hypothetical protein; Identified by Glimmer2; putative. (273 aa)
VC_1578Hypothetical protein; Identified by Glimmer2; putative. (78 aa)
VC_1580Transcriptional regulator, LysR family; Similar to GB:X66866 PID:403331 SP:P52692; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (303 aa)
VC_1581NADH dehydrogenase, putative; Similar to SP:P33607 PID:397909 GB:U00096 PID:1788614 PID:1799638; identified by sequence similarity; putative. (516 aa)
VC_1582Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0753 family. (862 aa)
VC_1842Conserved hypothetical protein; Identified by Glimmer2; putative. (35 aa)
VC_1843Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative. (378 aa)
VC_1844Cytochrome d ubiquinol oxidase, subunit I; Similar to PID:1926318; identified by sequence similarity; putative. (541 aa)
VC_2286Conserved hypothetical protein; Identified by Glimmer2; putative. (256 aa)
VC_2288Conserved hypothetical protein; Identified by Glimmer2; putative. (77 aa)
VC_2289Thiamin biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (367 aa)
nqrFNADH:ubiquinone oxidoreductase, Na translocating, beta subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (408 aa)
nqrENADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (198 aa)
nqrDNADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (210 aa)
nqrCNADH:ubiquinone oxidoreductase, Na translocating, gamma subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (257 aa)
nqrBNADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (427 aa)
nqrANADH:ubiquinone oxidoreductase, Na translocating, alpha subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (462 aa)
VC_A0152Conserved hypothetical protein; Identified by Glimmer2; putative. (107 aa)
VC_A0153Conserved hypothetical protein; Identified by Glimmer2; putative. (103 aa)
VC_A0154Conserved hypothetical protein; Identified by Glimmer2; putative. (158 aa)
VC_A0155NADH dehydrogenase, putative; Similar to GP:1934776; identified by sequence similarity; putative. (498 aa)
VC_A0156Conserved hypothetical protein; Identified by Glimmer2; putative. (117 aa)
VC_A0157NADH dehydrogenase, putative; Similar to GB:AL009126; identified by sequence similarity; putative. (891 aa)
VC_A0158Hypothetical protein; Identified by Glimmer2; putative. (66 aa)
VC_A0159Conserved hypothetical protein; Identified by Glimmer2; putative. (313 aa)
VC_A0160Tryptophan-specific transport protein; Similar to GB:L42023 SP:P44614 PID:1003469 PID:1222213 PID:1204542; identified by sequence similarity; putative. (411 aa)
tnaATryptophanase; Similar to GB:L10328 SP:P00913 GB:X15974 PID:147997 PID:290556; identified by sequence similarity; putative; Belongs to the beta-eliminating lyase family. (472 aa)
VC_A0872Cytochrome d ubiquinol oxidase, subunit I; Similar to GB:J03939 SP:P11026 PID:497637 GB:U00096 PID:1651327; identified by sequence similarity; putative. (530 aa)
VC_A0873Cytochrome d ubiquinol oxidase, subunit II; Similar to GB:J03939 SP:P11027 PID:145640 GB:U00096 PID:1651328; identified by sequence similarity; putative. (378 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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