STRINGSTRING
VC_0344 VC_0344 VC_0578 VC_0578 lpoA lpoA VC_0620 VC_0620 ompU ompU bamD bamD bamB bamB VC_0776 VC_0776 VC_0783 VC_0783 tcpF tcpF bamE bamE mltF mltF metN metN rlpA rlpA lptE lptE VC_0972 VC_0972 VC_1042 VC_1042 VC_1043 VC_1043 VC_1091 VC_1091 lolA lolA opgG opgG ompV ompV VC_1325 VC_1325 VC_1409 VC_1409 VC_1496 VC_1496 VC_1544 VC_1544 VC_1647 VC_1647 VC_1680 VC_1680 irgA irgA lptD lptD surA surA VC_0402 VC_0402 VC_0533 VC_0533 lpxM lpxM VC_0202 VC_0202 VC_0200 VC_0200 VC_0171 VC_0171 btuB btuB blc blc VC_A0227 VC_A0227 VC_A0130 VC_A0130 VC_A0064 VC_A0064 VC_A0059 VC_A0059 epsL epsL VC_2691 VC_2691 VC_2630 VC_2630 VC_2562 VC_2562 VC_2548 VC_2548 VC_2539 VC_2539 lptA lptA lptC lptC VC_2465 VC_2465 tolC tolC VC_2416 VC_2416 mltA mltA VC_2305 VC_2305 nqrE nqrE bamA bamA skp skp VC_2213 VC_2213 viuA viuA flgH flgH flgI flgI lolB lolB nutA nutA bamC bamC dsbE dsbE VC_1951 VC_1951 VC_1950 VC_1950 dctP dctP VC_1894 VC_1894 VC_1863 VC_1863 VC_1854 VC_1854 pal pal cpoB cpoB siaP siaP VC_1749 VC_1749 VC_1693 VC_1693 torA torA VC_A0406 VC_A0406 VC_A0443 VC_A0443 VC_A0545 VC_A0545 VC_A0576 VC_A0576 VC_A0578 VC_A0578 VC_A0591 VC_A0591 VC_A0625 VC_A0625 VC_A0726 VC_A0726 luxP luxP VC_A0759 VC_A0759 VC_A0862 VC_A0862 volA volA ompW ompW tonB tonB VC_A1008 VC_A1008 lamB lamB VC_A1098 VC_A1098 VC_A0350 VC_A0350
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VC_0344N-acetylmuramoyl-L-alanine amidase; Similar to SP:P26365 GB:Z11831 PID:304914 PID:42068 PID:537010; identified by sequence similarity; putative. (581 aa)
VC_0578Hemolysin, putative; Similar to GB:S57691 SP:P46028 PID:299398; identified by sequence similarity; putative. (189 aa)
lpoALipoprotein, putative; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). (653 aa)
VC_0620Peptide ABC transporter, periplasmic peptide-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative. (556 aa)
ompUOuter membrane protein OmpU; Forms pores that allow passive diffusion of small molecules across the outer membrane. (350 aa)
bamDConserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (253 aa)
bamBConserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (386 aa)
VC_0776Ferric vibriobactin ABC transporter, periplasmic ferric vibriobactin-binding protein; Similar to GB:M29730 SP:P14609 GB:X53274 PID:145944 PID:581195; identified by sequence similarity; putative. (325 aa)
VC_0783Conserved hypothetical protein; Identified by Glimmer2; putative. (660 aa)
tcpFToxin co-regulated pilus biosynthesis protein F; Involved in TCP pilus biogenesis. May be a channel protein. (338 aa)
bamESmall protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (136 aa)
mltFTransglycosylase, Slt family; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family. (530 aa)
metNABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (344 aa)
rlpARare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides; Belongs to the RlpA family. (263 aa)
lptERare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. (213 aa)
VC_0972Porin, putative; Similar to SP:P24305; identified by sequence similarity; putative. (349 aa)
VC_1042Long-chain fatty acid transport protein; Similar to GB:M60607 SP:P10384 GB:Y00552 PID:145910 PID:41372; identified by sequence similarity; putative. (432 aa)
VC_1043Long-chain fatty acid transport protein; Similar to GB:M60607 SP:P10384 GB:Y00552 PID:145910 PID:41372; identified by sequence similarity; putative. (428 aa)
VC_1091Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Similar to SP:P06202 GB:X05491 GB:X52093 PID:47802 PID:47808; identified by sequence similarity; putative. (543 aa)
lolAOuter membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane) (By similarity). (198 aa)
opgGPeriplasmic glucans biosynthesis protein MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (545 aa)
ompVOuter membrane protein OmpV; Similar to SP:P06111 PID:48372; identified by sequence similarity; putative. (257 aa)
VC_1325Galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein; Similar to SP:P23905 GB:X52093; identified by sequence similarity; putative. (324 aa)
VC_1409Multidrug resistance protein, putative; Similar to GP:3378279; identified by sequence similarity; putative. (484 aa)
VC_1496Tail-specific protease; Similar to GP:216618; identified by sequence similarity; putative. (665 aa)
VC_1544tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
VC_1647Conserved hypothetical protein; Identified by Glimmer2; putative. (637 aa)
VC_1680Peptide ABC transporter, periplasmic peptide-binding protein; Similar to SP:P36634 GB:X52093 GB:X74212 PID:414208; identified by sequence similarity; putative. (540 aa)
irgAIron-regulated outer membrane virulence protein, TonB receptor family; Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment; Belongs to the TonB-dependent receptor family. (652 aa)
lptDOrganic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. (787 aa)
surASurvival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. (431 aa)
VC_0402MSHA biogenesis protein MshL; Similar to PID:791156; identified by sequence similarity; putative. (559 aa)
VC_0533Lipoprotein NlpD; Similar to GP:2897901; identified by sequence similarity; putative. (311 aa)
lpxMLipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase; Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. (325 aa)
VC_0202iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to GB:D26562 SP:P07822 GB:M12486 PID:145951 PID:41441; identified by sequence similarity; putative. (319 aa)
VC_0200iron(III) compound receptor; Similar to GB:D26562 SP:P06971 GB:M12486 PID:145949 PID:473809; identified by sequence similarity; putative. (718 aa)
VC_0171Peptide ABC transporter, periplasmic peptide-binding protein; Similar to SP:P23847 GB:M35045 GB:X58051 PID:145797 PID:349225; identified by sequence similarity; putative. (542 aa)
btuBVitamin B12 receptor; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily. (611 aa)
blcLipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids (By similarity). (171 aa)
VC_A0227iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to GB:AL009126; identified by sequence similarity; putative. (333 aa)
VC_A0130Ribose ABC transporter, periplasmic D-ribose-binding protein; Similar to GB:L42023 SP:P44737 PID:1003892 PID:1222436 PID:1204755; identified by sequence similarity; putative. (294 aa)
VC_A0064TonB system receptor, putative; Similar to GB:L27149 PID:529727; identified by sequence similarity; putative. (713 aa)
VC_A0059Major outer membrane lipoprotein; Similar to GB:M13176 SP:P09461 GB:M28554 PID:150894 PID:150896; identified by sequence similarity; putative. (119 aa)
epsLGeneral secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for secretion of cholera toxin through the outer membrane. (407 aa)
VC_2691Periplasmic protein cpxP, putative; Similar to SP:P32158; identified by sequence similarity; putative. (167 aa)
VC_2630Fimbrial assembly protein; Similar to GB:L13865 SP:P34750 PID:459551; identified by sequence similarity; putative. (578 aa)
VC_25622`,3`-cyclic-nucleotide 2`-phosphodiesterase; Similar to SP:P08331 GB:M13464 PID:145584 GB:U00096 PID:1790658; identified by sequence similarity; putative; Belongs to the 5'-nucleotidase family. (681 aa)
VC_2548Conserved hypothetical protein; Identified by Glimmer2; putative. (582 aa)
VC_2539Thiamin ABC transporter, periplasmic thiamin-binding protein; Similar to GB:D10483 SP:P31550 GB:U09984 PID:216488 PID:497658; identified by sequence similarity; putative. (330 aa)
lptAConserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. (179 aa)
lptCHypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. (187 aa)
VC_2465sigma-E factor regulatory protein RseB; Similar to SP:P46186 PID:1050876 PID:987646 PID:1045630 GB:U00096; identified by sequence similarity; putative. (321 aa)
tolCOuter membrane protein TolC; Outer membrane channel, which is required for the function of several efflux systems (By similarity). Required to export RtxA cytotoxin; Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (438 aa)
VC_24162`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative; Similar to GB:AE000511 PID:2313187; identified by sequence similarity; putative; Belongs to the 5'-nucleotidase family. (634 aa)
mltAMembrane-bound lytic murein transglycosylase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. Degrades murein glycan strands and insoluble, high-molecular weight murein sacculi (By similarity). (368 aa)
VC_2305Outer membrane protein OmpK; Similar to PID:1166401 SP:P51002; identified by sequence similarity; putative. (296 aa)
nqrENADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (198 aa)
bamASurface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (803 aa)
skpOuter membrane protein OmpH; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm. (169 aa)
VC_2213Outer membrane protein OmpA; Similar to GP:2641145; identified by sequence similarity; putative; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (321 aa)
viuAFerric vibriobactin receptor; Receptor for ferric vibriobactin; Belongs to the TonB-dependent receptor family. (687 aa)
flgHFlagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (261 aa)
flgIFlagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (361 aa)
lolBOuter membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. (211 aa)
nutAUDP-sugar hydrolase; Degradation of extracellular 5'-nucleotides for nutritional needs. (553 aa)
bamCLipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (339 aa)
dsbEThiol:disulfide interchange protein DsbE; Involved in disulfide bond formation. Catalyzes a late, reductive step in the assembly of periplasmic c-type cytochromes, probably the reduction of disulfide bonds of the apocytochrome c to allow covalent linkage with the heme. Possible subunit of a heme lyase (By similarity); Belongs to the thioredoxin family. DsbE subfamily. (184 aa)
VC_1951Cytochrome c-type protein YecK; Similar to SP:P52005 GB:U00096 PID:1736519 PID:1736527 PID:1788181; identified by sequence similarity; putative; Belongs to the TorC/TorY family. (368 aa)
VC_1950Biotin sulfoxide reductase; Similar to SP:P46923 PID:1045667 GB:U00096 PID:1736518 PID:1736526; identified by sequence similarity; putative. (815 aa)
dctPC4-dicarboxylate-binding periplasmic protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system DctPQM involved in C4-dicarboxylates uptake. Belongs to the bacterial solute-binding protein 7 family. (332 aa)
VC_1894Conserved hypothetical protein; Identified by Glimmer2; putative. (196 aa)
VC_1863Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to PID:1166635 GB:U00096 PID:1788649 PID:1799691; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family. (260 aa)
VC_1854Porin, putative; Similar to GP:3377759; identified by sequence similarity; putative. (368 aa)
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (172 aa)
cpoBConserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. (254 aa)
siaPC4-dicarboxylate-binding periplasmic protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system SiaPQM that catalyzes unidirectional Na(+)-dependent sialic acid uptake. Binds the common sialic acid N-acetylneuraminic acid (Neu5Ac) with a high affinity. (321 aa)
VC_1749Hypothetical protein; Identified by Glimmer2; putative. (408 aa)
VC_1693Cytochrome c-type protein TorC; Similar to GP:3413832; identified by sequence similarity; putative; Belongs to the TorC/TorY family. (394 aa)
torAtrimethylamine-N-oxide reductase; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions. (820 aa)
VC_A0406Lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (171 aa)
VC_A0443Lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (171 aa)
VC_A05455`-nucleotidase, putative; Similar to GB:AE000520; identified by sequence similarity; putative; Belongs to the 5'-nucleotidase family. (580 aa)
VC_A0576Heme transport protein HutA; Similar to GB:L27149 PID:529727; identified by sequence similarity; putative. (698 aa)
VC_A0578Conserved hypothetical protein; Identified by Glimmer2; putative. (565 aa)
VC_A0591Peptide ABC transporter, periplasmic peptide-binding protein, putative; Similar to SP:P33913 GB:U00008 PID:453986 GB:U00096 PID:1788503; identified by sequence similarity; putative. (611 aa)
VC_A0625TonB receptor-related protein; Similar to PID:1638846; identified by sequence similarity; putative. (784 aa)
VC_A0726Molybdenum ABC transporter, periplasmic molybdenum-binding protein; Similar to GB:L34009 SP:P37329 PID:504498 PID:973214 PID:1147817; identified by sequence similarity; putative. (254 aa)
luxPluxP protein; Binds to the signaling molecule autoinducer 2 (AI-2), a furanosyl borate diester, (3a-methyl-5,6-dihydrofuro- [2,3d][1,3,2]dioxaborole-2,2,6,6a-tetraol). This complex then interacts with the LuxQ sensor protein (By similarity). (364 aa)
VC_A0759Arginine ABC transporter, periplasmic arginine-binding protein; Similar to SP:P30859 GB:X67753 GB:X86160 PID:40931 PID:769791; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family. (243 aa)
VC_A0862Long-chain fatty acid transport protein; Similar to GB:M60607 SP:P10384 GB:Y00552 PID:145910 PID:41372; identified by sequence similarity; putative. (412 aa)
volALipase, putative; Required for the utilization of the prevalent host lipid lysophosphatidylcholine (LPC). Functions as a lipase that cleaves exogenous LPC and generates free fatty acids, which are then transported into the cell by fatty acid transporters such as FadL, and used in various metabolic pathways. (796 aa)
ompWOuter membrane protein OmpW; Similar to SP:P17266 PID:48376 PID:2199526; identified by sequence similarity; putative. (217 aa)
tonBtonB1 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity). (249 aa)
VC_A1008Outer membrane protein, putative; Similar to PID:1658032; identified by sequence similarity; putative. (331 aa)
lamBMaltoporin; Involved in the transport of maltose and maltodextrins; Belongs to the porin LamB (TC 1.B.3) family. (416 aa)
VC_A1098ABC transporter, periplasmic substrate-binding protein; Similar to SP:P33590 GB:X73143 PID:404845 PID:466612 GB:U00096; identified by sequence similarity; putative. (521 aa)
VC_A0350Lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (171 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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