STRINGSTRING
VC_1349 VC_1349 VC_1653 VC_1653 VC_1397 VC_1397 VC_2038 VC_2038 VC_2063 VC_2063 VC_2369 VC_2369 VC_2453 VC_2453 VC_A0709 VC_A0709 VC_A1095 VC_A1095 luxU luxU VC_1080 VC_1080
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VC_1349Sensory box sensor histidine kinase/response regulator; Similar to PID:1653075; identified by sequence similarity; putative. (1331 aa)
VC_1653Sensory box sensor histidine kinase/response regulator VieS; Similar to GP:3123890; identified by sequence similarity; putative. (1146 aa)
VC_1397Chemotaxis protein CheA; Similar to PID:940147 SP:Q56310 GB:AE000512; identified by sequence similarity; putative. (761 aa)
VC_2038Hypothetical protein; Identified by Glimmer2; putative. (404 aa)
VC_2063Chemotaxis protein CheA; Similar to GB:M34669 SP:P07363 PID:145529 PID:145530 GB:U00096; identified by sequence similarity; putative. (785 aa)
VC_2369Sensor histidine kinase FexB; Similar to SP:P22763 GB:X53315 PID:40951 PID:606149 GB:U00096; identified by sequence similarity; putative. (785 aa)
VC_2453Sensor histidine kinase/response regulator; Similar to GB:D10888 SP:P26607 PID:216535 PID:882680 GB:U00096; identified by sequence similarity; putative. (927 aa)
VC_A0709Sensor protein TorS; Similar to SP:P39453 PID:1122856 GB:U00096 PID:1787227; identified by sequence similarity; putative. (1020 aa)
VC_A1095Chemotaxis protein CheA; Similar to GB:M34669 SP:P07363 PID:145529 PID:145530 GB:U00096; identified by sequence similarity; putative. (720 aa)
luxUPhosphorelay protein; Phosphorelay protein which receives sensory signals from a sensory kinase and transmit them to LuxO. At low cell density, a phosphoryl group is transferred from the sensory kinase, probably on His-57 and this phosphoryl group is further transferred to LuxO. (113 aa)
VC_1080Hypothetical protein; Identified by Glimmer2; putative. (121 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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