STRINGSTRING
VC_0616 VC_0616 VC_0617 VC_0617 VC_1095 VC_1095 VC_1683 VC_1683 VC_A0588 VC_A0588 VC_A0977 VC_A0977 VC_0170 VC_0170
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VC_0616Peptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (331 aa)
VC_0617Peptide ABC transporter, ATP-binding protein; Similar to GB:Pyro_h; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (327 aa)
VC_1095Oligopeptide ABC transporter, ATP-binding protein; Similar to GB:U00096 SP:P77737 PID:1742036 PID:1787500 PID:1805528; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (336 aa)
VC_1683Peptide ABC transporter, ATP-binding protein; Similar to SP:P36635 GB:U08190 PID:470682 GB:U00096 PID:1279403; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (331 aa)
VC_A0588Peptide ABC transporter, ATP-binding protein, putative; Similar to SP:P33916 PID:405909 GB:U00096 PID:1736845 PID:1788506; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (530 aa)
VC_A0977ABC transporter, ATP-binding protein; Similar to SP:P33916 PID:405909 GB:U00096 PID:1736845 PID:1788506; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (539 aa)
VC_0170Peptide ABC transporter, ATP-binding protein; Similar to GB:U00096 PID:1787051; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily. (571 aa)
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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