STRINGSTRING
hpnA hpnA tnaA tnaA CV_1540 CV_1540 CV_1545 CV_1545 fdxA2 fdxA2 CV_1548 CV_1548 CV_1549 CV_1549 CV_1550 CV_1550 CV_1551 CV_1551 CV_1552 CV_1552 CV_1553 CV_1553 CV_1554 CV_1554 CV_1826 CV_1826 CV_2371 CV_2371 CV_2443 CV_2443 CV_2444 CV_2444 CV_2445 CV_2445 CV_2447 CV_2447 CV_2448 CV_2448 CV_2449 CV_2449 CV_2450 CV_2450 CV_2971 CV_2971 CV_2972 CV_2972 CV_2973 CV_2973 CV_2975 CV_2975 CV_2976 CV_2976 CV_2977 CV_2977 CV_2978 CV_2978 CV_2979 CV_2979 CV_3270 CV_3270 vioD vioD vioC vioC vioA vioA CV_4372 CV_4372
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hpnADihydrokaempferol 4-reductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0451. (360 aa)
tnaATryptophanase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3033; Belongs to the beta-eliminating lyase family. (461 aa)
CV_1540Hypothetical protein. (70 aa)
CV_1545Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1233. (511 aa)
fdxA2Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)
CV_1548Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (137 aa)
CV_1549Hypothetical protein. (117 aa)
CV_1550Hypothetical protein. (164 aa)
CV_1551Hypothetical protein. (117 aa)
CV_1552Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (137 aa)
CV_1553Probable enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1024. (260 aa)
CV_1554Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0346. (140 aa)
CV_1826Probable FAD-dependent monooxygenase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0654. (384 aa)
CV_2371Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3000. (248 aa)
CV_2443Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (389 aa)
CV_2444Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2207. (108 aa)
CV_2445Hypothetical protein. (259 aa)
CV_2447Probable dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/COG0451. (336 aa)
CV_2448Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0491. (190 aa)
CV_2449Probable coenzyme F390 synthetase; Identified by sequence similarity; putative; ORF located using Blastx/COG1541. (429 aa)
CV_2450Hypothetical protein. (207 aa)
CV_2971Hypothetical protein. (301 aa)
CV_2972Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (65 aa)
CV_2973Probable ecf-family RNA polymerase sigma factor transcription regulator protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1595; Belongs to the sigma-70 factor family. ECF subfamily. (187 aa)
CV_2975Hypothetical protein. (177 aa)
CV_2976Probable oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/COG1028. (253 aa)
CV_2977Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2907. (419 aa)
CV_2978Probable geranylgeranyl-diphosphate geranylgeranyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/COG1562. (286 aa)
CV_2979Probable phytoene synthase-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1562. (270 aa)
CV_3270Hypothetical protein. (191 aa)
vioDvioD - hydroxylase; Catalyzes the oxygenation of the 6-position of protodeoxyviolaceinate to form proviolacein. (373 aa)
vioCvioC monooxygenase; Catalyzes the hydroxylation of the 16-position of protoviolaceinate and protodeoxyviolaceinate to form violacein and deoxyviolacein, respectively. (429 aa)
vioAvioA - tryptophan 2-monooxygenase; The enzyme generates the imine form of indole 3-pyruvate (IPA) from L-tryptophan (L-Trp), with concomitant two-electron reduction of O(2) to H(2)O(2). (418 aa)
CV_4372Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3000. (294 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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