STRINGSTRING
CV_1810 CV_1810 slyB slyB CV_1813 CV_1813 sohB sohB CV_1816 CV_1816 rluC rluC CV_1819 CV_1819 CV_1892 CV_1892 CV_1894 CV_1894 CV_1896 CV_1896
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_1810Probable transcriptional regulator, marR family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1846. (150 aa)
slyBPAL cross-reacting lipoprotein precursor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3133. (153 aa)
CV_1813Probable nitroreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0778. (196 aa)
sohBSerine protease; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0616. (312 aa)
CV_1816Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2146. (113 aa)
rluCPseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (312 aa)
CV_1819Hypothetical protein. (85 aa)
CV_1892Probable integral membrane transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.10. (453 aa)
CV_1894Hypothetical protein. (148 aa)
CV_1896Hypothetical protein. (126 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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