STRINGSTRING
exbD2 exbD2 CV_0399 CV_0399 CV_0400 CV_0400 CV_1491 CV_1491 CV_1970 CV_1970 CV_1971 CV_1971 exbB1 exbB1 exbD5 exbD5 exbD3 exbD3 CV_1982 CV_1982 CV_1983 CV_1983 exbB2 exbB2 exbD1 exbD1 exbD4 exbD4 fepA fepA CV_3906 CV_3906 CV_4254 CV_4254
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
exbD2Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848/TC:2.C.1.1.1. (136 aa)
CV_0399Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1. (225 aa)
CV_0400Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0810/TC:2.C.1.1.1. (275 aa)
CV_1491Probable outer membrane receptor; Identified by sequence similarity; putative; ORF located using Blastx/COG4771. (699 aa)
CV_1970Probable TonB-dependent receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.1.6. (854 aa)
CV_1971Conserved hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (216 aa)
exbB1Biopolymer transport protein; Identified by sequence similarity; putative. (248 aa)
exbD5Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative;/COG0848/TC:2.C.1.1.1. (147 aa)
exbD3Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848. (140 aa)
CV_1982Probable tonB dependent receptor; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1629/TC:1.B.14.3.1. (868 aa)
CV_1983Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0810/TC:2.C.1.1.1. (234 aa)
exbB2Biopolymer transport protein; Identified by sequence similarity; putative. (248 aa)
exbD1Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848. (147 aa)
exbD4Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848. (140 aa)
fepAEnterobactin-iron outermembrane receptor protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.7.1. (684 aa)
CV_3906Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810/TC:2.C.1.1.1. (243 aa)
CV_4254Probable TonB protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0810. (278 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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