STRINGSTRING
CV_3345 CV_3345 exdD exdD CV_3348 CV_3348 CV_3349 CV_3349 CV_3350 CV_3350
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_3345Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2835; Belongs to the UPF0434 family. (60 aa)
exdDBiopolymer transport exbD-related transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0848/TC:2.C.1.1.1. (138 aa)
CV_3348Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1. (204 aa)
CV_3349Hypothetical protein. (70 aa)
CV_3350Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (153 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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