STRINGSTRING
CV_0893 CV_0893 CV_0894 CV_0894 oprC oprC CV_0896 CV_0896 hydG hydG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_0893Probable 5-carboxymethyl-2-hydroxymuconate D-isomerase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3232. (118 aa)
CV_0894Hypothetical protein. (135 aa)
oprCOuter membrane protein OprC complement; Identified by sequence similarity; putative; ORF located using Blastx/COG1629/TC:1.B.14.4.2. (642 aa)
CV_0896Probable two-component sensor; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642. (413 aa)
hydGTwo-component response sensor- transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0784. (174 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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