STRINGSTRING
lafT lafT CV_0399 CV_0399 tolQ tolQ motA2 motA2 exbB1 exbB1 motA1 motA1 CV_3348 CV_3348
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lafTChemotaxis lafT protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.1. (288 aa)
CV_0399Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1. (225 aa)
tolQtolQ-related transport transmembrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (222 aa)
motA2Chemotaxis motA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.2. (249 aa)
exbB1Biopolymer transport protein; Identified by sequence similarity; putative. (248 aa)
motA1Chemotaxis motA protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1291/TC:1.A.30.1.1. (284 aa)
CV_3348Probable exbB-like biopolymer transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1. (204 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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