STRINGSTRING
sdhB sdhB CV_1170 CV_1170 CV_3027 CV_3027 CV_3028 CV_3028 frdB frdB gltD gltD CV_4235 CV_4235
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sdhBSuccinate dehydrogenase iron-sulfur protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0479; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (236 aa)
CV_1170Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0348. (477 aa)
CV_3027Probable ferredoxin; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247. (938 aa)
CV_3028Probable iron-sulphur protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1139. (485 aa)
frdBFumarate reductase, subunit B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0479. (248 aa)
gltDGlutamate synthase, small subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0493. (476 aa)
CV_4235Probable (S)-2-hydroxy-acid oxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0247. (1284 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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