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| | ugpC | Sn-glycerol-3-phosphate transport, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (370 aa) |
| | dnaA | Chromosomal replication iniciator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (467 aa) |
| | CV_0006 | Probable site-specific DNA-methyltransferase, cytosine-specific; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1401. (670 aa) |
| | CV_0065 | Probable SWI/SNF family helicase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0553. (910 aa) |
| | CV_0068 | Probable colicin V secretion atp-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.110.2. (727 aa) |
| | pilR | Two-component system, regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2204. (437 aa) |
| | gltL | ABC superfamily (glutamate/aspartate transporter), ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1126. (244 aa) |
| | CV_0127 | Probable Cytidine deaminase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2131. (499 aa) |
| | pilT | Twitching motility protein PilT; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2805. (345 aa) |
| | pilU2 | Twitching mobility protein transport fimbria; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2805. (378 aa) |
| | uvrD | DNA helicase II; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0210. (713 aa) |
| | CV_0258 | Probable ABC transporter, sugar ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1130; Belongs to the ABC transporter superfamily. (372 aa) |
| | CV_0278 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0563. (183 aa) |
| | CV_0279 | Hypothetical protein. (191 aa) |
| | CV_0307 | Probable ABC transporter, ATP-binding/permease fusion; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2274/TC:3.A.1.109.1. (722 aa) |
| | rhlE3 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (472 aa) |
| | CV_0392 | Probable transcription regulator protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3284. (594 aa) |
| | hslU | Heat shock protein hslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (448 aa) |
| | CV_0437 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1131. (300 aa) |
| | CV_0449 | Probable ABC transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1127. (272 aa) |
| | soj | Chromosome partitioning protein ParA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1192/TC:8.A.3.2.1. (258 aa) |
| | recQ | ATP-dependent DNA helicase recQ; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0514. (609 aa) |
| | cobU | Bifunctional adenosylcobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. (175 aa) |
| | holA | DNA-directed DNA polymerase, delta subunit; Identified by sequence similarity; putative; ORF located using Blastx/COG1466. (313 aa) |
| | hlyB | Identified by sequence similarity; putative; ORF located using Blastx/COG2274/TC:3.A.1.109.1. (709 aa) |
| | bioD | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (210 aa) |
| | mdlB | ABC superfamily (ATP-binding membrane) transport protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1132/TC:3.A.1.109.2. (579 aa) |
| | mdlA | ABC transporter ATP-binding membrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1132/TC:3.A.1.109.2. (580 aa) |
| | CV_0639 | Hypothetical protein. (414 aa) |
| | parA | Chromosome partitioning protein, ParA family ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1192/TC:8.A.3.3.2. (263 aa) |
| | atpA | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (514 aa) |
| | atpD | H+-transporting two-sector ATPase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (465 aa) |
| | CV_0688 | Probable transcriptional regulatory protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2204. (444 aa) |
| | purA1 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (432 aa) |
| | msbA | Transport ATP-binding protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (584 aa) |
| | aroK | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (184 aa) |
| | obg | Probable GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (386 aa) |
| | hisP | ATP-binding component of histidine transport; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126. (255 aa) |
| | CV_0861 | Hypothetical protein. (936 aa) |
| | recG | ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (682 aa) |
| | pstB | ABC-type phosphate transport system, ATPase component; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (257 aa) |
| | rhlE4 | ATP-dependent RNA helicase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0513. (441 aa) |
| | fleN | Flagellar synthesis regulator FleN; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0455. (294 aa) |
| | flhF | Flagellar biosynthetic protein FlhF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1419. (479 aa) |
| | rtcR | Transcriptional regulatory protein rtcr; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1221. (535 aa) |
| | udk | Uridine kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0572. (204 aa) |
| | dppD | Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0444; Belongs to the ABC transporter superfamily. (326 aa) |
| | dppF | Dipeptide transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1124; Belongs to the ABC transporter superfamily. (323 aa) |
| | priA | Primosomal protein N`; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (727 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; Belongs to the UvrB family. In the N-terminal section; belongs to the UvrB family. (1130 aa) |
| | CV_1197 | Probable ABC-type proline/glycine betaine transport systems, ATPase component; Identified by sequence similarity; putative; ORF located using Blastx/COG1125. (363 aa) |
| | mrp | Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (362 aa) |
| | CV_1210 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3596. (293 aa) |
| | CV_1224 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1203. (693 aa) |
| | CV_1280 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1131. (364 aa) |
| | potG | Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (391 aa) |
| | CV_1376 | Probable ATPase associated with chromosome architecture; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2256. (443 aa) |
| | CV_1421 | Probable ABC transporter ATP binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0488. (570 aa) |
| | pilU1 | Twitching motility protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2805. (376 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (964 aa) |
| | CV_1487 | Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1120/TC:3.A.1.14.3. (255 aa) |
| | livG | Leucine/isoleucine/valine transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0411. (256 aa) |
| | livF | Leucine/isoleucine/valine transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0410. (236 aa) |
| | hrpA | ATP-dependent helicase hrpA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1643. (1311 aa) |
| | pta | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (693 aa) |
| | cobB | Cobyrinic acid A,C-diamide synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1797. (430 aa) |
| | btuR | cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. (200 aa) |
| | CV_1560 | Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1120/TC:3.A.1.14.3. (260 aa) |
| | cobW | Cobalamin synthesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0523. (368 aa) |
| | CV_1570 | Probable chelatase protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1239. (635 aa) |
| | cobQ | Cobyric acid synthase protein; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (490 aa) |
| | rho | Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (418 aa) |
| | kdpD | Two-component regulatory protein sensor kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0642. (895 aa) |
| | recA | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (350 aa) |
| | dnaX | DNA polymerase subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (639 aa) |
| | dgk | Deoxyguanosine kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1428. (211 aa) |
| | CV_1678 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130; Belongs to the ABC transporter superfamily. (335 aa) |
| | nadR | Nicotinamide mononucleotide-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/COG3172. (185 aa) |
| | CV_1720 | Probable UDP-galactose-lipid carrier transferase; Identified by sequence similarity; putative; ORF located using Blastx/COG2326. (283 aa) |
| | cydC | ATP-binding/permease fusion ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.109.1. (694 aa) |
| | CV_1755 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1203. (1103 aa) |
| | prkA | Protein kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2766. (642 aa) |
| | CV_1793 | Probable iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1120. (266 aa) |
| | cysA | Sulfate transport ATP-binding ABC transporter protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (358 aa) |
| | phnL | Phosphonates transport ATP-binding protein phnL; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136. (235 aa) |
| | phnK | Phosphonates transport ATP-binding protein phnK; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1101/TC:3.A.1.5.1. (257 aa) |
| | phnN | ATP-binding component of phosphonate transport; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP). (185 aa) |
| | cysA2 | Probable ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (366 aa) |
| | uvrA | Excinuclease ABC, subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa) |
| | CV_1910 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130; Belongs to the ABC transporter superfamily. (347 aa) |
| | clpB | ATP-dependent Clp protease subunit; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Belongs to the ClpA/ClpB family. (859 aa) |
| | CV_1981 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1123/TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. (569 aa) |
| | dinG | ATP-dependent DNA helicase; DNA-dependent ATPase and 5'-3' DNA helicase. (707 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (597 aa) |
| | era | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (296 aa) |
| | rsgA | Probable integral membrane nucleotide protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (341 aa) |
| | CV_2089 | Probable ATP-dependent RNA helicase; Identified by sequence similarity; putative; ORF located using Blastx/COG0513. (562 aa) |
| | cysC | Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (219 aa) |
| | CV_2105 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx. (358 aa) |
| | CV_2140 | Probable portal protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx. (533 aa) |
| | CV_2157 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0542/TC:9.B.42.1.1. (398 aa) |
| | CV_2184 | Probable ABC transport protein, msbA family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1132. (596 aa) |
| | fepC | Enterobactin-iron transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1120. (278 aa) |
| | CV_2290 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1116. (258 aa) |
| | CV_2295 | Probable ABC transporter system, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family. (245 aa) |
| | cysN | Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (477 aa) |
| | recN | DNA repair protein recN; May be involved in recombinational repair of damaged DNA. (556 aa) |
| | tdk | Thymidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/COG1435. (184 aa) |
| | mglA | Sugar ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1129. (509 aa) |
| | rsgA-2 | Conserved hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (287 aa) |
| | CV_2373 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0714. (283 aa) |
| | prfC | Peptide chain release factor RF-3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (536 aa) |
| | CV_2394 | Probable cell division ftsk transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2; Belongs to the FtsK/SpoIIIE/SftA family. (964 aa) |
| | typA | GTP-binding protein TypA; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1217. (605 aa) |
| | CV_2459 | Probable ABC transporter system, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1131. (563 aa) |
| | CV_2474 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx. (129 aa) |
| | ftsK | Cell division ftsk transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2. (769 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (468 aa) |
| | abcZ | ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0488. (637 aa) |
| | mobB | Molybdopterin-guanine dinucleotide biosynthesis protein B; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1763. (164 aa) |
| | lon | Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (804 aa) |
| | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (426 aa) |
| | CV_2603 | Probable type III secretion system ATP synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.1. (444 aa) |
| | invC | Surface presentation of antigens, secretory proteins; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157. (429 aa) |
| | CV_2679 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1192. (252 aa) |
| | CV_2685 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1123/TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. (567 aa) |
| | macB | Probable ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (644 aa) |
| | CV_2738 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0714. (371 aa) |
| | CV_2758 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0488. (634 aa) |
| | CV_2816 | Probable PhoH-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1875. (467 aa) |
| | hflX-2 | Probable GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (462 aa) |
| | rhlE2 | ATP-dependent RNA helicase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0513; Belongs to the DEAD box helicase family. (420 aa) |
| | dbpA | ATP-dependent RNA helicase dbpA; Identified by sequence similarity; putative; ORF located using Blastx/COG0513; Belongs to the DEAD box helicase family. (460 aa) |
| | tauB | Taurine ATP-binding component of a transport system; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (261 aa) |
| | rhlE1 | ATP-dependent RNA helicase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0513; Belongs to the DEAD box helicase family. (439 aa) |
| | CV_2923 | Probable partition-related protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1192. (215 aa) |
| | gntV | Gluconokinase; Identified by sequence similarity; putative; ORF located using Blastx/COG3265. (185 aa) |
| | lolD | Probable ATP-binding component, ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (230 aa) |
| | radA | DNA repair protein radA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (453 aa) |
| | CV_2981 | Probable cystine transport ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126. (255 aa) |
| | fliI2 | Flagellum-specific ATP synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157. (437 aa) |
| | rbsA | D-ribose transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (502 aa) |
| | CV_3022 | Probable nucleotide-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1485. (387 aa) |
| | cmk | Cytidylate kinase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0283. (222 aa) |
| | znuC | Zinc transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1121. (247 aa) |
| | CV_3067 | Probable cobalamin synthesis protein; Identified by sequence similarity; putative; ORF located using Blastx. (282 aa) |
| | fliI1 | Flagellum-specific ATP synthase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.2. (466 aa) |
| | CV_3138 | Probable two-component response regulator; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2204. (458 aa) |
| | CV_3148 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2204. (775 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (670 aa) |
| | CV_3161 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1130. (319 aa) |
| | CV_3331 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1137. (242 aa) |
| | hprK | Probable kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). (288 aa) |
| | CV_3336 | Conserved hypothetical protein; Displays ATPase and GTPase activities. (280 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (218 aa) |
| | lpxK | Tetraacyldisaccharide 4`-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (339 aa) |
| | CV_3360 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0488. (555 aa) |
| | minD | Septum site-determining protein minD; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2894. (270 aa) |
| | miaA | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (325 aa) |
| | pyrG | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (546 aa) |
| | purA2 | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (431 aa) |
| | hflX | GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (376 aa) |
| | der | Probable GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (469 aa) |
| | feoB | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (589 aa) |
| | CV_3577 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0488. (543 aa) |
| | glnG | Nitrogen assimilation regulatory response regulator/transcription regulator protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa) |
| | CV_3612 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2607. (271 aa) |
| | CV_3614 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0593; Belongs to the DnaA family. (224 aa) |
| | thdF | Thiophene and furan oxidation protein ThdF; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (450 aa) |
| | CV_4400 | Probable colicin V secretion ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2274. (706 aa) |
| | CV_4397 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1136. (229 aa) |
| | CV_4394 | Probable ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1125/TC:3.A.1.12.4. (309 aa) |
| | engB | GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (206 aa) |
| | oppD | Oligopeptide transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0444/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily. (333 aa) |
| | oppF | Oligopeptide ABC transport system ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1124/TC:3.A.1.5.1; Belongs to the ABC transporter superfamily. (329 aa) |
| | CV_4284 | Probable nitrate ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1116/TC:3.A.1.17.1. (437 aa) |
| | secA | Preprotein translocase secA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (903 aa) |
| | CV_4259 | Probable nitrogen assimilation regulatory protein NtrX; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2204. (422 aa) |
| | CV_4220 | Probable two-component transcriptional regulator; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2204. (446 aa) |
| | ruvB | Holliday junction DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (345 aa) |
| | ftsE | Cell division ATP-binding protein ftsE, ABC transporter ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division. (217 aa) |
| | ftsY | Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. (375 aa) |
| | fusA | Elongation factor; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (698 aa) |
| | tufA | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa) |
| | CV_4151 | Probable PhoH-related protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1702. (343 aa) |
| | potA | Polyamine transport protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (361 aa) |
| | recC | Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (1065 aa) |
| | recB | Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] (1196 aa) |
| | CV_4075 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx. (494 aa) |
| | recD | Exodeoxyribonuclease V, alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (565 aa) |
| | CV_4070 | Probable ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1132. (620 aa) |
| | rep | ATP-dependent DNA helicase; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (673 aa) |
| | ychF | Conserved hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa) |
| | CV_4000 | Probable competence protein ComM; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0606. (500 aa) |
| | CV_3980 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3523. (1260 aa) |
| | CV_3965 | Probable ClpA/B-type chaperone; Identified by sequence similarity; putative; ORF located using Blastx/COG0542; Belongs to the ClpA/ClpB family. (875 aa) |
| | CV_3943 | Probable ATP-binding component of ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136. (249 aa) |
| | CV_3912 | Conserved hypothetical protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (312 aa) |
| | smc | Probable chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1162 aa) |
| | fecE | Ferric citrate transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1120. (255 aa) |
| | ffh | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] (451 aa) |
| | pilB | Type 4 fimbrial biogenesis protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2804/TC:3.A.15.1.1. (568 aa) |
| | coaE | Probable dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (204 aa) |
| | CV_3821 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0802. (163 aa) |
| | CV_3813 | Probable type II secretion system protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (486 aa) |
| | hflB | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (639 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (210 aa) |
| | CV_3734 | Probable ATP-binding component, ABC transporter; Identified by sequence similarity; putative; ORF located using Blastx/COG1136. (232 aa) |
| | tmk | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (212 aa) |
| | holB | DNA-directed DNA polymerase III, delta subunit; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0470. (334 aa) |
| | CV_3685 | Probable MoxR like protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0714. (301 aa) |
| | clpA | ATP-dependent Clp protease, ATP-binding subunit; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0542; Belongs to the ClpA/ClpB family. (760 aa) |
| | mutS | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (873 aa) |
