STRINGSTRING
CV_0553 CV_0553 CV_3489 CV_3489 cbpD1 cbpD1 cpbD cpbD CV_0554 CV_0554
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_0553Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397. (323 aa)
CV_3489Probable chitin-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3397. (192 aa)
cbpD1Carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3397. (382 aa)
cpbDCarbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3397. (386 aa)
CV_0554Probable carbohydrate-binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG3397. (381 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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