STRINGSTRING
CV_1629 CV_1629 CV_1195 CV_1195 CV_4392 CV_4392
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_1629Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2113. (283 aa)
CV_1195Probable ABC transporter periplasmic binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1732/TC:3.A.1.12.4. (315 aa)
CV_4392Probable ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG1732/TC:3.A.1.12.3. (305 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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