STRINGSTRING
gapA gapA hptG hptG trxA trxA rpsB rpsB tsf tsf invA invA invF invF ompC ompC nfsA nfsA rpoS rpoS CV_3708 CV_3708 rpoA rpoA rplE rplE rplB rplB pykF pykF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gapAGlyceraldehyde-3-phosphate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0057; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa)
hptGProbable chaperone heat shock protein hptG; Molecular chaperone. Has ATPase activity. (650 aa)
trxAThioredoxin; Identified by sequence similarity; putative; ORF located using Blastx/COG0526; Belongs to the thioredoxin family. (108 aa)
rpsB30S ribosomal protein S2; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0052; Belongs to the universal ribosomal protein uS2 family. (243 aa)
tsfElongation factor EF-Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (288 aa)
invAInvasion protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1298/TC:3.A.6.1.1. (686 aa)
invFAraC-family regulatory protein/invasion protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2207. (197 aa)
ompCPorin signal peptide protein; Identified by sequence similarity; putative; ORF located using Blastx/COG3203. (358 aa)
nfsAOxygen-insensitive NADPH nitroreductase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0778; Belongs to the flavin oxidoreductase frp family. (246 aa)
rpoSRNA sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (316 aa)
CV_3708Probable thiol peroxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2077. (220 aa)
rpoADNA-directed RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (327 aa)
rplE50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa)
rplB50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa)
pykFPyruvate kinase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0469; Belongs to the pyruvate kinase family. (468 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.