STRINGSTRING
CV_3787 CV_3787 sodB1 sodB1 CV_1107 CV_1107 sodB2 sodB2 gapA gapA CV_0190 CV_0190 CV_3555 CV_3555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CV_3787Probable glutathione peroxidase protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0386; Belongs to the glutathione peroxidase family. (159 aa)
sodB1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (192 aa)
CV_1107Probable glutathione peroxidase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0386; Belongs to the glutathione peroxidase family. (192 aa)
sodB2Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (234 aa)
gapAGlyceraldehyde-3-phosphate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0057; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (332 aa)
CV_0190Probable glyceraldehyde 3-phosphate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0057; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (336 aa)
CV_3555Probable glutathione peroxidase protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0386; Belongs to the glutathione peroxidase family. (158 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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